Variant report

Variant	rs539238
Chromosome Location	chr11:105814995-105814996
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:105812592..105814172-chr11:105814503..105816529,2	K562	blood:

Extended variants
information (count: 71 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:70)

rs_ID	r²[population]
rs1144410	0.88[AFR][1000 genomes];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1147065	0.87[ASN][1000 genomes]
rs1262357	0.86[ASN][1000 genomes]
rs1267444	0.87[ASN][1000 genomes]
rs17104770	0.87[ASN][1000 genomes]
rs1939153	0.80[EUR][1000 genomes]
rs1939800	0.85[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs2000633	0.91[ASN][1000 genomes]
rs2096785	0.89[ASN][1000 genomes]
rs2155338	0.87[ASN][1000 genomes]
rs2256121	0.89[ASN][1000 genomes]
rs2509484	0.91[ASN][1000 genomes]
rs2564909	0.91[ASN][1000 genomes]
rs2564910	0.89[ASN][1000 genomes]
rs2846214	0.89[ASN][1000 genomes]
rs2846215	0.87[ASN][1000 genomes]
rs2846219	0.90[ASN][1000 genomes]
rs2847187	0.91[ASN][1000 genomes]
rs3758790	0.87[ASN][1000 genomes]
rs471396	0.87[ASN][1000 genomes]
rs471795	0.87[ASN][1000 genomes]
rs505829	0.87[ASN][1000 genomes]
rs507450	0.87[ASN][1000 genomes]
rs509512	0.85[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs511106	0.87[ASN][1000 genomes]
rs513947	0.86[ASN][1000 genomes]
rs534844	0.87[ASN][1000 genomes]
rs548814	0.97[AFR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs556968	0.87[ASN][1000 genomes]
rs561643	0.87[ASN][1000 genomes]
rs562546	0.87[ASN][1000 genomes]
rs567161	0.85[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs571533	0.85[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs582479	0.84[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs587978	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs588638	0.85[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs589104	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs589574	0.87[ASN][1000 genomes]
rs592656	0.87[ASN][1000 genomes]
rs593130	0.87[ASN][1000 genomes]
rs601480	0.88[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs604545	0.87[ASN][1000 genomes]
rs609235	0.86[ASN][1000 genomes]
rs609665	0.81[AFR][1000 genomes]
rs619323	0.87[ASN][1000 genomes]
rs622178	0.88[AFR][1000 genomes];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs622367	0.83[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs631002	0.86[AFR][1000 genomes];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs638777	0.85[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs639003	0.85[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs640988	0.85[ASN][1000 genomes]
rs641574	0.84[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs645905	0.84[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs654035	0.87[ASN][1000 genomes]
rs656292	0.87[ASN][1000 genomes]
rs6591144	0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs659840	0.87[ASN][1000 genomes]
rs660278	0.87[ASN][1000 genomes]
rs665554	0.87[ASN][1000 genomes]
rs669397	0.85[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs669793	0.84[AFR][1000 genomes];0.80[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs675001	0.85[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs675084	0.87[ASN][1000 genomes]
rs677315	0.87[ASN][1000 genomes]
rs681156	0.88[AFR][1000 genomes];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs684470	0.87[ASN][1000 genomes]
rs685725	0.91[EUR][1000 genomes]
rs694514	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7116046	0.86[ASN][1000 genomes]
rs948297	0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832257	chr11:105662753-105817576	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:105807600-105815800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr11:105807600-105819400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr11:105808800-105816800	Weak transcription	HUES48 Cell Line	embryonic stem cell
4	chr11:105808800-105816800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
5	chr11:105811000-105816000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
6	chr11:105813000-105817200	Weak transcription	Brain Inferior Temporal Lobe	brain
7	chr11:105813800-105817000	Weak transcription	Brain Angular Gyrus	brain
8	chr11:105814000-105818600	Weak transcription	Brain Cingulate Gyrus	brain
9	chr11:105814000-105818600	Weak transcription	Brain Substantia Nigra	brain
10	chr11:105814200-105815200	Weak transcription	Brain Anterior Caudate	brain
11	chr11:105814200-105815400	Weak transcription	Brain Hippocampus Middle	brain
12	chr11:105814200-105818000	Weak transcription	Cortex derived primary cultured neurospheres	brain
13	chr11:105814200-105818000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr11:105814200-105818800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
15	chr11:105814400-105815400	Weak transcription	Fetal Lung	lung

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