Variant report

Variant	rs2564909
Chromosome Location	chr11:105865015-105865016
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 73 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:73)

rs_ID	r²[population]
rs1043144	0.80[CEU][hapmap];0.81[CHB][hapmap];0.81[JPT][hapmap];0.93[YRI][hapmap]
rs11226908	0.84[CHB][hapmap];0.82[JPT][hapmap]
rs1144410	0.89[JPT][hapmap];0.89[YRI][hapmap]
rs1147065	0.84[ASN][1000 genomes]
rs1262357	0.82[ASN][1000 genomes]
rs1267444	0.89[CHB][hapmap];0.94[JPT][hapmap];0.84[ASN][1000 genomes]
rs1939153	0.89[JPT][hapmap]
rs1939800	0.89[CHB][hapmap];0.94[JPT][hapmap];0.81[ASN][1000 genomes]
rs1939810	0.81[CHB][hapmap]
rs2000633	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2096785	0.97[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2155338	0.88[CEU][hapmap];0.90[CHB][hapmap];0.89[JPT][hapmap];0.82[AMR][1000 genomes];0.80[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2256121	0.97[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2509484	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2564910	0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2846214	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2846215	0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2846219	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2846221	0.85[CHB][hapmap]
rs2847178	0.80[AFR][1000 genomes]
rs2847187	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3758790	0.89[CHB][hapmap];0.94[JPT][hapmap];0.84[ASN][1000 genomes]
rs471396	0.95[CHB][hapmap];0.95[JPT][hapmap];0.84[ASN][1000 genomes]
rs471795	0.90[CHB][hapmap];0.94[JPT][hapmap];0.84[ASN][1000 genomes]
rs505829	0.89[CHB][hapmap];0.94[JPT][hapmap];0.84[ASN][1000 genomes]
rs507450	0.90[CHB][hapmap];0.95[JPT][hapmap];0.84[ASN][1000 genomes]
rs509512	0.92[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.86[AFR][1000 genomes];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs511106	0.83[CHB][hapmap];0.94[JPT][hapmap];0.84[ASN][1000 genomes]
rs513947	0.85[ASN][1000 genomes]
rs534844	0.82[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs539238	0.91[ASN][1000 genomes]
rs541640	0.90[CHB][hapmap];0.95[JPT][hapmap]
rs548814	0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs556968	0.90[CHB][hapmap];0.95[JPT][hapmap];0.82[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs561643	0.90[CHB][hapmap];0.95[JPT][hapmap];0.82[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs562546	0.81[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs567161	0.86[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs571533	0.86[AFR][1000 genomes];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs582479	0.94[CHB][hapmap];0.86[JPT][hapmap]
rs587978	0.89[JPT][hapmap];0.82[YRI][hapmap]
rs588638	0.86[AFR][1000 genomes];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs589104	0.82[CEU][hapmap];0.94[JPT][hapmap];0.89[YRI][hapmap];0.83[ASN][1000 genomes]
rs589574	0.84[ASN][1000 genomes]
rs592656	0.84[ASN][1000 genomes]
rs593130	0.89[CHB][hapmap];0.94[JPT][hapmap];0.84[ASN][1000 genomes]
rs601480	0.88[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.83[AFR][1000 genomes];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs604545	0.84[ASN][1000 genomes]
rs609235	0.89[CHB][hapmap];0.94[JPT][hapmap];0.83[ASN][1000 genomes]
rs609665	0.89[YRI][hapmap];0.82[AFR][1000 genomes]
rs619323	0.89[CHB][hapmap];0.94[JPT][hapmap];0.82[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs622178	0.89[JPT][hapmap];0.89[YRI][hapmap]
rs622367	0.92[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.85[AFR][1000 genomes];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs631002	0.89[JPT][hapmap];0.89[YRI][hapmap]
rs638777	0.88[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.86[AFR][1000 genomes];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs639003	0.92[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.86[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs640988	0.82[ASN][1000 genomes]
rs641574	0.89[CHB][hapmap];0.94[JPT][hapmap];0.81[ASN][1000 genomes]
rs645905	0.92[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.88[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs654035	0.90[CHB][hapmap];0.95[JPT][hapmap];0.84[ASN][1000 genomes]
rs656292	0.89[CHB][hapmap];0.95[JPT][hapmap];0.84[ASN][1000 genomes]
rs6591144	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs659840	0.84[ASN][1000 genomes]
rs660278	0.84[ASN][1000 genomes]
rs665554	0.90[CHB][hapmap];0.95[JPT][hapmap];0.82[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs669397	0.92[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.86[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs669793	0.93[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs675001	0.86[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs677315	0.82[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs681156	0.81[CEU][hapmap];0.89[JPT][hapmap];0.90[YRI][hapmap]
rs684470	0.84[ASN][1000 genomes]
rs685725	0.89[JPT][hapmap]
rs694514	0.82[CEU][hapmap];0.91[ASN][1000 genomes]
rs948297	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:86 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:105843800-105866400	Weak transcription	Brain Angular Gyrus	brain
2	chr11:105848200-105880400	Weak transcription	Fetal Brain Male	brain
3	chr11:105849800-105866600	Weak transcription	Brain Substantia Nigra	brain
4	chr11:105857800-105866600	Weak transcription	Fetal Lung	lung
5	chr11:105860000-105876400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr11:105860000-105876400	Weak transcription	Muscle Satellite Cultured Cells	--
7	chr11:105860200-105866400	Weak transcription	Skeletal Muscle Male	skeletal muscle
8	chr11:105860400-105874200	Weak transcription	H1 Cell Line	embryonic stem cell
9	chr11:105860600-105866600	Weak transcription	HUES6 Cell Line	embryonic stem cell
10	chr11:105861200-105866600	Weak transcription	Skeletal Muscle Female	skeletal muscle
11	chr11:105861200-105879200	Weak transcription	HMEC	breast
12	chr11:105861400-105866600	Weak transcription	Esophagus	oesophagus
13	chr11:105861600-105866600	Weak transcription	H9 Cell Line	embryonic stem cell
14	chr11:105861800-105866600	Weak transcription	Lung	lung
15	chr11:105862000-105866600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
16	chr11:105862600-105866400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr11:105862800-105865800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
18	chr11:105862800-105866400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
19	chr11:105862800-105866600	Weak transcription	Gastric	stomach
20	chr11:105862800-105883400	Weak transcription	Psoas Muscle	Psoas
21	chr11:105863000-105876600	Weak transcription	Fetal Kidney	kidney
22	chr11:105863000-105880200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
23	chr11:105863200-105866600	Weak transcription	Ovary	ovary
24	chr11:105863400-105865400	Weak transcription	Liver	Liver
25	chr11:105863400-105866600	Weak transcription	HUES48 Cell Line	embryonic stem cell
26	chr11:105863400-105866600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
27	chr11:105863400-105866600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
28	chr11:105863400-105866600	Weak transcription	NHDF-Ad	bronchial
29	chr11:105863600-105866400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
30	chr11:105863600-105866600	Weak transcription	Fetal Thymus	thymus
31	chr11:105863600-105866600	Weak transcription	Stomach Smooth Muscle	stomach
32	chr11:105863800-105865400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
33	chr11:105863800-105866400	Weak transcription	Adipose Nuclei	Adipose
34	chr11:105864000-105865200	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
35	chr11:105864000-105865600	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain
36	chr11:105864000-105866600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
37	chr11:105864000-105866600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
38	chr11:105864000-105866600	Weak transcription	Fetal Intestine Large	intestine
39	chr11:105864000-105891600	Weak transcription	Colonic Mucosa	Colon
40	chr11:105864200-105865200	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
41	chr11:105864200-105865200	ZNF genes & repeats	Brain Cingulate Gyrus	brain
42	chr11:105864200-105866600	Weak transcription	Brain Inferior Temporal Lobe	brain
43	chr11:105864200-105866600	Weak transcription	Pancreas	Pancrea
44	chr11:105864200-105866600	Weak transcription	Rectal Mucosa Donor 31	rectum
45	chr11:105864400-105866400	Weak transcription	Brain Hippocampus Middle	brain
46	chr11:105864400-105866600	Weak transcription	Fetal Heart	heart
47	chr11:105864400-105867200	Strong transcription	Brain Anterior Caudate	brain
48	chr11:105864600-105866200	Weak transcription	Osteobl	bone
49	chr11:105864600-105866400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
50	chr11:105864600-105866600	Weak transcription	Primary T cells fromperipheralblood	blood

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