The 2.0 version of rSNPBase

Variant report

Variant rs2847178
Chromosome Location chr11:105877624-105877625
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:123 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr11:105848200-105880400 Weak transcription Fetal Brain Male brain
2 chr11:105861200-105879200 Weak transcription HMEC breast
3 chr11:105862800-105883400 Weak transcription Psoas Muscle Psoas
4 chr11:105863000-105880200 Weak transcription iPS-15b Cell Line embryonic stem cell
5 chr11:105864000-105891600 Weak transcription Colonic Mucosa Colon
6 chr11:105865000-105890400 Weak transcription A549 lung
7 chr11:105865200-105891600 Weak transcription Hela-S3 cervix
8 chr11:105865400-105880200 Weak transcription Rectal Smooth Muscle rectum
9 chr11:105865800-105879800 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
10 chr11:105866000-105879800 Weak transcription HUVEC blood vessel
11 chr11:105867200-105879600 Weak transcription NHLF lung
12 chr11:105867400-105878800 Weak transcription Primary T helper naive cells from peripheral blood blood
13 chr11:105867400-105878800 Weak transcription Fetal Heart heart
14 chr11:105867800-105878000 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
15 chr11:105870800-105880400 Weak transcription Esophagus oesophagus
16 chr11:105871000-105878400 Weak transcription Brain Substantia Nigra brain
17 chr11:105871000-105892200 Weak transcription ES-WA7 Cell Line embryonic stem cell
18 chr11:105873000-105883800 Strong transcription Dnd41 blood
19 chr11:105873200-105882200 ZNF genes & repeats Primary hematopoietic stem cells G-CSF-mobilized Male --
20 chr11:105873800-105878800 ZNF genes & repeats Primary hematopoietic stem cells blood
21 chr11:105874000-105881600 Strong transcription Foreskin Melanocyte Primary Cells skin03 Skin
22 chr11:105874000-105882400 Strong transcription Foreskin Keratinocyte Primary Cells skin02 Skin
23 chr11:105874200-105878000 ZNF genes & repeats hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
24 chr11:105874600-105879200 Weak transcription Placenta Placenta
25 chr11:105874600-105881800 Strong transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
26 chr11:105874600-105882200 Strong transcription Fetal Lung lung
27 chr11:105874600-105883800 Strong transcription Primary T cells from cord blood blood
28 chr11:105874800-105879200 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
29 chr11:105874800-105879200 Weak transcription Rectal Mucosa Donor 31 rectum
30 chr11:105874800-105881600 Strong transcription Ganglion Eminence derived primary cultured neurospheres brain
31 chr11:105875000-105878400 Weak transcription K562 blood
32 chr11:105875400-105880200 Weak transcription HepG2 liver
33 chr11:105875800-105881800 Strong transcription ES-I3 Cell Line embryonic stem cell
34 chr11:105875800-105882200 ZNF genes & repeats GM12878-XiMat blood
35 chr11:105875800-105882600 Strong transcription Primary T cells fromperipheralblood blood
36 chr11:105876000-105879600 ZNF genes & repeats H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
37 chr11:105876000-105881800 Strong transcription Liver Liver
38 chr11:105876200-105879800 Weak transcription Placenta Amnion Placenta Amnion
39 chr11:105876200-105882800 Strong transcription Primary T helper cells fromperipheralblood blood
40 chr11:105876400-105877800 ZNF genes & repeats Primary monocytes fromperipheralblood blood
41 chr11:105876400-105877800 ZNF genes & repeats Fetal Stomach stomach
42 chr11:105876400-105877800 ZNF genes & repeats Lung lung
43 chr11:105876400-105878400 Strong transcription Brain Angular Gyrus brain
44 chr11:105876400-105878400 Strong transcription Brain Inferior Temporal Lobe brain
45 chr11:105876400-105878600 ZNF genes & repeats Primary hematopoietic stem cells G-CSF-mobilized Female --
46 chr11:105876400-105878600 Strong transcription Foreskin Fibroblast Primary Cells skin02 Skin
47 chr11:105876400-105879200 Strong transcription Primary T helper naive cells fromperipheralblood blood
48 chr11:105876400-105880400 Strong transcription Primary B cells from cord blood blood
49 chr11:105876400-105881200 Strong transcription Brain Hippocampus Middle brain
50 chr11:105876400-105881400 Strong transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived

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Last update: Aug 31, 2015