Variant report

Variant	rs2509484
Chromosome Location	chr11:105860723-105860724
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 60 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:60)

rs_ID	r²[population]
rs1147065	0.84[ASN][1000 genomes]
rs1262357	0.82[ASN][1000 genomes]
rs1267444	0.84[ASN][1000 genomes]
rs1939800	0.81[ASN][1000 genomes]
rs2000633	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2096785	0.98[AFR][1000 genomes];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2155338	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2256121	0.98[AFR][1000 genomes];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2564909	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2564910	0.97[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2846214	0.98[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2846215	0.98[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2846219	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2847178	0.81[AFR][1000 genomes]
rs2847187	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3758790	0.84[ASN][1000 genomes]
rs471396	0.84[ASN][1000 genomes]
rs471795	0.84[ASN][1000 genomes]
rs505829	0.84[ASN][1000 genomes]
rs507450	0.84[ASN][1000 genomes]
rs509512	0.90[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs511106	0.84[ASN][1000 genomes]
rs513947	0.85[ASN][1000 genomes]
rs534844	0.82[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs539238	0.91[ASN][1000 genomes]
rs548814	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs556968	0.82[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs561643	0.82[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs562546	0.81[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs567161	0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs571533	0.90[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs588638	0.90[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs589104	0.83[ASN][1000 genomes]
rs589574	0.84[ASN][1000 genomes]
rs592656	0.84[ASN][1000 genomes]
rs593130	0.84[ASN][1000 genomes]
rs601480	0.87[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs604545	0.84[ASN][1000 genomes]
rs609235	0.83[ASN][1000 genomes]
rs609665	0.86[AFR][1000 genomes]
rs619323	0.82[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs622367	0.89[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs638777	0.90[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs639003	0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs640988	0.82[ASN][1000 genomes]
rs641574	0.81[ASN][1000 genomes]
rs645905	0.92[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs654035	0.84[ASN][1000 genomes]
rs656292	0.84[ASN][1000 genomes]
rs6591144	0.84[AMR][1000 genomes];0.80[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs659840	0.84[ASN][1000 genomes]
rs660278	0.84[ASN][1000 genomes]
rs665554	0.82[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs669397	0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs669793	0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs675001	0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs677315	0.82[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs684470	0.84[ASN][1000 genomes]
rs694514	0.91[ASN][1000 genomes]
rs948297	0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:105843800-105866400	Weak transcription	Brain Angular Gyrus	brain
2	chr11:105848200-105880400	Weak transcription	Fetal Brain Male	brain
3	chr11:105849800-105866600	Weak transcription	Brain Substantia Nigra	brain
4	chr11:105851400-105862600	Weak transcription	Cortex derived primary cultured neurospheres	brain
5	chr11:105851400-105864000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr11:105854600-105865000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr11:105857800-105866600	Weak transcription	Fetal Lung	lung
8	chr11:105858200-105864000	Weak transcription	Brain Germinal Matrix	brain
9	chr11:105859800-105860800	Enhancers	HUES64 Cell Line	embryonic stem cell
10	chr11:105859800-105860800	Enhancers	iPS-20b Cell Line	embryonic stem cell
11	chr11:105860000-105860800	Enhancers	iPS-15b Cell Line	embryonic stem cell
12	chr11:105860000-105863800	Weak transcription	Fetal Brain Female	brain
13	chr11:105860000-105876400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr11:105860000-105876400	Weak transcription	Muscle Satellite Cultured Cells	--
15	chr11:105860200-105866400	Weak transcription	Skeletal Muscle Male	skeletal muscle
16	chr11:105860400-105863800	Weak transcription	Brain Anterior Caudate	brain
17	chr11:105860400-105864200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
18	chr11:105860400-105874200	Weak transcription	H1 Cell Line	embryonic stem cell
19	chr11:105860600-105862800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
20	chr11:105860600-105863000	Weak transcription	HUES48 Cell Line	embryonic stem cell
21	chr11:105860600-105866600	Weak transcription	HUES6 Cell Line	embryonic stem cell

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