Variant report

Variant	rs571533
Chromosome Location	chr11:105839129-105839130
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 68 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:68)

rs_ID	r²[population]
rs1144410	0.82[ASN][1000 genomes]
rs1147065	0.85[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs1262357	0.85[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs1267444	0.85[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs17104770	0.84[ASN][1000 genomes]
rs1939800	0.87[ASN][1000 genomes]
rs2000633	0.88[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2096785	0.88[AFR][1000 genomes];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2155338	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2256121	0.88[AFR][1000 genomes];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2509484	0.90[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2564909	0.86[AFR][1000 genomes];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2564910	0.87[AFR][1000 genomes];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2846214	0.88[AFR][1000 genomes];0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2846215	0.88[AFR][1000 genomes];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2846219	0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2847187	0.88[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3758790	0.84[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs471396	0.85[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs471795	0.85[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs505829	0.85[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs507450	0.85[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs509512	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs511106	0.85[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs513947	0.85[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs534844	0.83[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs539238	0.85[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs548814	0.87[AFR][1000 genomes];0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs556968	0.83[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs561643	0.83[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs562546	0.86[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs567161	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs582479	0.84[ASN][1000 genomes]
rs587978	0.85[ASN][1000 genomes]
rs588638	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs589104	0.89[ASN][1000 genomes]
rs589574	0.84[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs592656	0.84[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs593130	0.85[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs601480	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs604545	0.83[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs609235	0.83[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs609665	0.96[AFR][1000 genomes]
rs619323	0.83[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs622178	0.82[ASN][1000 genomes]
rs622367	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs631002	0.82[ASN][1000 genomes]
rs638777	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs639003	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs640988	0.85[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs641574	0.87[ASN][1000 genomes]
rs645905	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs654035	0.85[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs656292	0.85[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs6591144	0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs659840	0.85[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs660278	0.85[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs665554	0.83[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs669397	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs669793	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs675001	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs675084	0.84[ASN][1000 genomes]
rs677315	0.83[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs681156	0.81[ASN][1000 genomes]
rs684470	0.85[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs694514	0.83[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs7116046	0.86[ASN][1000 genomes]
rs948297	0.87[AFR][1000 genomes];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:105827400-105850200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr11:105838600-105839200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr11:105838600-105839200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr11:105838600-105839200	Enhancers	NH-A	brain
5	chr11:105838600-105839400	Genic enhancers	Cortex derived primary cultured neurospheres	brain
6	chr11:105838600-105839400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
7	chr11:105838800-105839200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr11:105838800-105839200	Enhancers	Pancreas	Pancrea
9	chr11:105838800-105839200	Enhancers	HMEC	breast
10	chr11:105838800-105842800	Weak transcription	Pancreatic Islets	Pancreatic Islet
11	chr11:105839000-105839200	Enhancers	HUES64 Cell Line	embryonic stem cell
12	chr11:105839000-105839400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived

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