Variant report

Variant	rs589104
Chromosome Location	chr11:105807772-105807773
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 60 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:59)

rs_ID	r²[population]
rs1043144	0.83[YRI][hapmap]
rs11226908	0.88[JPT][hapmap]
rs1144410	0.88[ASW][hapmap];0.96[CEU][hapmap];0.85[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.81[MKK][hapmap];0.91[TSI][hapmap];0.93[YRI][hapmap];0.91[AFR][1000 genomes];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1267444	0.90[CHB][hapmap];0.83[CHD][hapmap];0.89[JPT][hapmap]
rs1939153	0.88[CHD][hapmap];0.81[GIH][hapmap];0.95[JPT][hapmap];0.87[LWK][hapmap];0.84[MEX][hapmap];0.91[TSI][hapmap];0.80[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1939800	0.90[CHB][hapmap];0.83[CHD][hapmap];0.91[GIH][hapmap];0.89[JPT][hapmap];0.83[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs2000633	0.83[ASN][1000 genomes]
rs2096785	0.81[ASN][1000 genomes]
rs2155338	0.90[CHB][hapmap];0.83[JPT][hapmap]
rs2256121	0.81[ASN][1000 genomes]
rs2509484	0.83[ASN][1000 genomes]
rs2564909	0.83[ASN][1000 genomes]
rs2564910	0.81[ASN][1000 genomes]
rs2846214	0.81[ASN][1000 genomes]
rs2846215	0.80[ASN][1000 genomes]
rs2846219	0.82[ASN][1000 genomes]
rs2847187	0.83[ASN][1000 genomes]
rs3758790	0.90[CHB][hapmap];0.81[CHD][hapmap];0.80[GIH][hapmap];0.89[JPT][hapmap]
rs471396	0.89[CHB][hapmap];0.89[JPT][hapmap]
rs471795	0.90[CHB][hapmap];0.88[JPT][hapmap]
rs505829	0.90[CHB][hapmap];0.82[CHD][hapmap];0.80[GIH][hapmap];0.89[JPT][hapmap]
rs507450	0.90[CHB][hapmap];0.89[JPT][hapmap]
rs509512	0.82[ASW][hapmap];0.89[CEU][hapmap];0.90[CHB][hapmap];0.93[CHD][hapmap];0.89[GIH][hapmap];0.95[JPT][hapmap];1.00[LWK][hapmap];0.86[TSI][hapmap];0.96[YRI][hapmap];0.89[ASN][1000 genomes]
rs511106	0.82[CHB][hapmap];0.89[JPT][hapmap]
rs539238	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs541640	0.90[CHB][hapmap];0.89[JPT][hapmap]
rs548814	0.89[AFR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs556968	0.90[CHB][hapmap];0.89[JPT][hapmap]
rs561643	0.89[CHB][hapmap];0.89[JPT][hapmap]
rs567161	0.89[ASN][1000 genomes]
rs571533	0.89[ASN][1000 genomes]
rs582479	0.93[CHB][hapmap];0.86[JPT][hapmap];0.86[AMR][1000 genomes]
rs587978	0.88[ASW][hapmap];0.96[CEU][hapmap];0.95[CHB][hapmap];0.95[GIH][hapmap];0.95[JPT][hapmap];0.93[LWK][hapmap];0.86[MKK][hapmap];0.98[TSI][hapmap];0.86[YRI][hapmap];0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs588638	0.89[ASN][1000 genomes]
rs593130	0.90[CHB][hapmap];0.81[CHD][hapmap];0.80[GIH][hapmap];0.89[JPT][hapmap]
rs596100	0.81[CHB][hapmap];0.93[CHD][hapmap];0.87[GIH][hapmap]
rs601480	0.87[ASW][hapmap];0.85[CEU][hapmap];0.90[CHB][hapmap];0.93[CHD][hapmap];0.89[GIH][hapmap];0.95[JPT][hapmap];1.00[LWK][hapmap];0.82[MKK][hapmap];0.86[TSI][hapmap];0.96[YRI][hapmap];0.83[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs609235	0.90[CHB][hapmap];0.89[JPT][hapmap]
rs609665	0.95[LWK][hapmap];0.93[YRI][hapmap]
rs619323	0.90[CHB][hapmap];0.82[CHD][hapmap];0.80[GIH][hapmap];0.89[JPT][hapmap]
rs622178	0.88[ASW][hapmap];0.96[CEU][hapmap];0.85[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.81[MKK][hapmap];0.91[TSI][hapmap];0.93[YRI][hapmap];0.91[AFR][1000 genomes];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs622367	0.88[CEU][hapmap];0.90[CHB][hapmap];0.95[JPT][hapmap];0.96[YRI][hapmap];0.88[ASN][1000 genomes]
rs631002	0.88[ASW][hapmap];0.96[CEU][hapmap];0.85[CHB][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.81[MKK][hapmap];0.91[TSI][hapmap];0.93[YRI][hapmap];0.88[AFR][1000 genomes];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs638777	0.84[CEU][hapmap];0.88[CHB][hapmap];0.94[JPT][hapmap];0.96[YRI][hapmap];0.89[ASN][1000 genomes]
rs639003	0.88[CEU][hapmap];0.94[CHB][hapmap];0.94[JPT][hapmap];0.96[YRI][hapmap];0.89[ASN][1000 genomes]
rs641574	0.90[CHB][hapmap];0.86[CHD][hapmap];0.91[GIH][hapmap];0.89[JPT][hapmap];0.80[MEX][hapmap];0.86[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs645905	0.88[CEU][hapmap];0.90[CHB][hapmap];0.95[JPT][hapmap];0.96[YRI][hapmap];0.89[ASN][1000 genomes]
rs649098	0.83[GIH][hapmap];0.86[TSI][hapmap]
rs654035	0.90[CHB][hapmap];0.89[JPT][hapmap]
rs656292	0.89[CHB][hapmap];0.89[JPT][hapmap]
rs6591144	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs665554	0.90[CHB][hapmap];0.89[JPT][hapmap]
rs669397	0.82[ASW][hapmap];0.89[CEU][hapmap];0.90[CHB][hapmap];0.93[CHD][hapmap];0.89[GIH][hapmap];0.95[JPT][hapmap];1.00[LWK][hapmap];0.86[TSI][hapmap];0.96[YRI][hapmap];0.88[ASN][1000 genomes]
rs669793	0.89[CEU][hapmap];0.89[CHB][hapmap];0.94[JPT][hapmap];0.96[YRI][hapmap];0.89[ASN][1000 genomes]
rs675001	0.89[ASN][1000 genomes]
rs681156	0.96[CEU][hapmap];0.85[CHB][hapmap];0.95[JPT][hapmap];0.93[YRI][hapmap];0.90[AFR][1000 genomes];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs685725	0.96[CEU][hapmap];0.94[JPT][hapmap];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs694514	1.00[CEU][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs948297	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832257	chr11:105662753-105817576	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:105799400-105810200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr11:105804600-105807800	Enhancers	Brain Cingulate Gyrus	brain
3	chr11:105805200-105808200	Enhancers	Cortex derived primary cultured neurospheres	brain
4	chr11:105805200-105809000	Enhancers	Fetal Lung	lung
5	chr11:105805400-105807800	Enhancers	Brain Hippocampus Middle	brain
6	chr11:105805400-105808800	Enhancers	HUES48 Cell Line	embryonic stem cell
7	chr11:105805600-105808000	Enhancers	Brain Substantia Nigra	brain
8	chr11:105805600-105808400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr11:105805600-105809000	Enhancers	Breast Myoepithelial Primary Cells	Breast
10	chr11:105805800-105808800	Enhancers	HMEC	breast
11	chr11:105806000-105808800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr11:105806400-105808000	Enhancers	Brain Anterior Caudate	brain
13	chr11:105806400-105808800	Enhancers	Hela-S3	cervix
14	chr11:105806400-105809400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr11:105806600-105808800	Enhancers	Muscle Satellite Cultured Cells	--
16	chr11:105806600-105808800	Enhancers	Fetal Kidney	kidney
17	chr11:105806800-105807800	Enhancers	Brain Angular Gyrus	brain
18	chr11:105806800-105808400	Weak transcription	NHEK	skin
19	chr11:105806800-105808800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
20	chr11:105806800-105810400	Weak transcription	H9 Cell Line	embryonic stem cell
21	chr11:105807000-105808600	Enhancers	Pancreatic Islets	Pancreatic Islet
22	chr11:105807000-105809200	Enhancers	HUVEC	blood vessel
23	chr11:105807000-105810400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr11:105807000-105810600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
25	chr11:105807200-105808200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
26	chr11:105807200-105808200	Weak transcription	HUES6 Cell Line	embryonic stem cell
27	chr11:105807200-105808200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
28	chr11:105807200-105808200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
29	chr11:105807200-105808400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
30	chr11:105807200-105808600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
31	chr11:105807400-105808400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
32	chr11:105807400-105808400	Weak transcription	HUES64 Cell Line	embryonic stem cell
33	chr11:105807400-105808400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
34	chr11:105807400-105812400	Weak transcription	Brain Inferior Temporal Lobe	brain
35	chr11:105807600-105808000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
36	chr11:105807600-105808800	Enhancers	NH-A	brain
37	chr11:105807600-105815800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
38	chr11:105807600-105819400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung

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