Variant report

Variant	rs1043144
Chromosome Location	chr11:105878844-105878845
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:105876657..105879207-chr11:105895904..105897448,2	K562	blood:
2	chr11:105872692..105874858-chr11:105876640..105880174,4	K562	blood:
3	chr11:105872692..105874858-chr11:105877960..105880174,2	K562	blood:

Extended variants
information (count: 18 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs1144410	0.82[YRI][hapmap]
rs1939810	0.80[CHB][hapmap];0.85[JPT][hapmap];0.82[MEX][hapmap];0.83[ASN][1000 genomes]
rs2564912	0.81[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs2846221	0.87[ASW][hapmap];0.85[JPT][hapmap];0.82[MEX][hapmap];0.80[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs509512	0.81[JPT][hapmap];0.86[MEX][hapmap];0.86[YRI][hapmap]
rs561643	0.81[JPT][hapmap]
rs589104	0.83[YRI][hapmap]
rs601480	0.81[JPT][hapmap];0.85[MEX][hapmap];0.86[YRI][hapmap]
rs609665	0.83[YRI][hapmap]
rs622178	0.82[YRI][hapmap]
rs622367	0.81[JPT][hapmap];0.92[YRI][hapmap]
rs631002	0.82[YRI][hapmap]
rs638777	0.84[YRI][hapmap]
rs639003	0.85[JPT][hapmap];0.86[YRI][hapmap]
rs645905	0.81[JPT][hapmap];0.86[YRI][hapmap]
rs669397	0.81[JPT][hapmap];0.86[MEX][hapmap];0.86[YRI][hapmap]
rs669793	0.80[JPT][hapmap];0.86[YRI][hapmap]
rs681156	0.82[YRI][hapmap]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs1043144	TRPC6	cis	parietal	SCAN

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:105848200-105880400	Weak transcription	Fetal Brain Male	brain
2	chr11:105861200-105879200	Weak transcription	HMEC	breast
3	chr11:105862800-105883400	Weak transcription	Psoas Muscle	Psoas
4	chr11:105863000-105880200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chr11:105864000-105891600	Weak transcription	Colonic Mucosa	Colon
6	chr11:105865000-105890400	Weak transcription	A549	lung
7	chr11:105865200-105891600	Weak transcription	Hela-S3	cervix
8	chr11:105865400-105880200	Weak transcription	Rectal Smooth Muscle	rectum
9	chr11:105865800-105879800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
10	chr11:105866000-105879800	Weak transcription	HUVEC	blood vessel
11	chr11:105867200-105879600	Weak transcription	NHLF	lung
12	chr11:105870800-105880400	Weak transcription	Esophagus	oesophagus
13	chr11:105871000-105892200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
14	chr11:105873000-105883800	Strong transcription	Dnd41	blood
15	chr11:105873200-105882200	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr11:105874000-105881600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
17	chr11:105874000-105882400	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr11:105874600-105879200	Weak transcription	Placenta	Placenta
19	chr11:105874600-105881800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr11:105874600-105882200	Strong transcription	Fetal Lung	lung
21	chr11:105874600-105883800	Strong transcription	Primary T cells from cord blood	blood
22	chr11:105874800-105879200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
23	chr11:105874800-105879200	Weak transcription	Rectal Mucosa Donor 31	rectum
24	chr11:105874800-105881600	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
25	chr11:105875400-105880200	Weak transcription	HepG2	liver
26	chr11:105875800-105881800	Strong transcription	ES-I3 Cell Line	embryonic stem cell
27	chr11:105875800-105882200	ZNF genes & repeats	GM12878-XiMat	blood
28	chr11:105875800-105882600	Strong transcription	Primary T cells fromperipheralblood	blood
29	chr11:105876000-105879600	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr11:105876000-105881800	Strong transcription	Liver	Liver
31	chr11:105876200-105879800	Weak transcription	Placenta Amnion	Placenta Amnion
32	chr11:105876200-105882800	Strong transcription	Primary T helper cells fromperipheralblood	blood
33	chr11:105876400-105879200	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
34	chr11:105876400-105880400	Strong transcription	Primary B cells from cord blood	blood
35	chr11:105876400-105881200	Strong transcription	Brain Hippocampus Middle	brain
36	chr11:105876400-105881400	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
37	chr11:105876400-105881400	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
38	chr11:105876400-105881600	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
39	chr11:105876400-105881600	Strong transcription	Muscle Satellite Cultured Cells	--
40	chr11:105876400-105881600	Strong transcription	Skeletal Muscle Male	skeletal muscle
41	chr11:105876400-105881800	Strong transcription	Rectal Mucosa Donor 29	rectum
42	chr11:105876400-105882000	Strong transcription	H9 Cell Line	embryonic stem cell
43	chr11:105876400-105882200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
44	chr11:105876400-105882200	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
45	chr11:105876400-105882200	Strong transcription	Duodenum Mucosa	Duodenum
46	chr11:105876600-105881600	Strong transcription	Primary T killer naive cells fromperipheralblood	blood
47	chr11:105876600-105881600	Strong transcription	Left Ventricle	heart
48	chr11:105876600-105881600	Strong transcription	HSMMtube	muscle
49	chr11:105876600-105881600	Strong transcription	NHDF-Ad	bronchial
50	chr11:105876600-105882400	Strong transcription	iPS-20b Cell Line	embryonic stem cell

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