Variant report

Variant	rs2564912
Chromosome Location	chr11:105883193-105883194
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr11:105883137-105883247	MCF10A-Er-Src	breast:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:105880605..105882322-chr11:105882782..105885279,2	K562	blood:
2	chr11:105875586..105878320-chr11:105881792..105883720,2	K562	blood:

Variant related genes	Relation type
MSANTD4	TF binding region

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs1043144	0.81[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs12293460	0.84[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1939810	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2155344	0.91[ASN][1000 genomes]
rs2249950	0.90[ASN][1000 genomes]
rs2564913	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2846220	0.81[ASN][1000 genomes]
rs2846221	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2847181	0.91[ASN][1000 genomes]
rs6591148	0.89[AMR][1000 genomes]

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:105862800-105883400	Weak transcription	Psoas Muscle	Psoas
2	chr11:105864000-105891600	Weak transcription	Colonic Mucosa	Colon
3	chr11:105865000-105890400	Weak transcription	A549	lung
4	chr11:105865200-105891600	Weak transcription	Hela-S3	cervix
5	chr11:105871000-105892200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
6	chr11:105873000-105883800	Strong transcription	Dnd41	blood
7	chr11:105874600-105883800	Strong transcription	Primary T cells from cord blood	blood
8	chr11:105876600-105884000	Strong transcription	Fetal Thymus	thymus
9	chr11:105877000-105884400	Strong transcription	Monocytes-CD14+_RO01746	blood
10	chr11:105877200-105886800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
11	chr11:105877600-105892400	Weak transcription	Spleen	Spleen
12	chr11:105877800-105892400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr11:105878600-105892400	Weak transcription	Stomach Mucosa	stomach
14	chr11:105880400-105883200	Weak transcription	Fetal Heart	heart
15	chr11:105880600-105891600	Weak transcription	Placenta Amnion	Placenta Amnion
16	chr11:105880800-105883400	Weak transcription	Esophagus	oesophagus
17	chr11:105880800-105884600	Weak transcription	HepG2	liver
18	chr11:105880800-105888600	Weak transcription	Right Ventricle	heart
19	chr11:105880800-105891600	Weak transcription	Fetal Intestine Small	intestine
20	chr11:105880800-105892400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
21	chr11:105881400-105885600	Enhancers	Brain Substantia Nigra	brain
22	chr11:105881400-105887000	Weak transcription	Colon Smooth Muscle	Colon
23	chr11:105881400-105892000	Weak transcription	Fetal Muscle Trunk	muscle
24	chr11:105881600-105883200	Weak transcription	Fetal Brain Female	brain
25	chr11:105881600-105883200	Weak transcription	HSMMtube	muscle
26	chr11:105881600-105883200	Weak transcription	HUVEC	blood vessel
27	chr11:105881600-105883400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
28	chr11:105881600-105883400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
29	chr11:105881600-105883400	Enhancers	Brain Inferior Temporal Lobe	brain
30	chr11:105881600-105883400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
31	chr11:105881600-105883400	Weak transcription	Skeletal Muscle Male	skeletal muscle
32	chr11:105881600-105883400	Weak transcription	Skeletal Muscle Female	skeletal muscle
33	chr11:105881600-105883600	Weak transcription	Pancreas	Pancrea
34	chr11:105881600-105883800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
35	chr11:105881600-105884000	Enhancers	Brain Angular Gyrus	brain
36	chr11:105881600-105884400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
37	chr11:105881600-105884400	Enhancers	Brain Anterior Caudate	brain
38	chr11:105881600-105885000	Weak transcription	Fetal Brain Male	brain
39	chr11:105881600-105887000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
40	chr11:105881600-105887000	Weak transcription	Small Intestine	intestine
41	chr11:105881600-105888200	Enhancers	Brain Hippocampus Middle	brain
42	chr11:105881600-105889800	Weak transcription	NHEK	skin
43	chr11:105881600-105890200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
44	chr11:105881600-105890200	Weak transcription	Fetal Kidney	kidney
45	chr11:105881600-105890200	Weak transcription	Stomach Smooth Muscle	stomach
46	chr11:105881600-105890800	Weak transcription	Rectal Smooth Muscle	rectum
47	chr11:105881600-105891600	Weak transcription	Fetal Intestine Large	intestine
48	chr11:105881600-105891800	Weak transcription	Rectal Mucosa Donor 31	rectum
49	chr11:105881600-105892000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
50	chr11:105881800-105883200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links