Variant report

Variant	rs2155344
Chromosome Location	chr11:105888809-105888810
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:105887466..105889548-chr11:105890648..105893882,3	K562	blood:
2	chr11:105879125..105881953-chr11:105887356..105891263,3	K562	blood:
3	chr11:105884249..105887015-chr11:105888601..105891455,3	MCF-7	breast:
4	chr11:105885814..105889172-chr11:105892054..105893913,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000170903	Chromatin interaction

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10895892	0.82[ASN][1000 genomes]
rs10895893	0.82[ASN][1000 genomes]
rs10895896	0.80[ASN][1000 genomes]
rs11226894	0.82[ASN][1000 genomes]
rs11226896	0.82[ASN][1000 genomes]
rs12293460	0.88[ASN][1000 genomes]
rs1939810	0.91[ASN][1000 genomes]
rs1939816	0.80[ASN][1000 genomes]
rs1939817	0.80[ASN][1000 genomes]
rs2236663	0.82[ASN][1000 genomes]
rs2249950	0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2564912	0.91[ASN][1000 genomes]
rs2564913	0.90[ASN][1000 genomes]
rs2846220	0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2846221	0.92[ASN][1000 genomes]
rs2847181	0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7952626	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv527285	chr11:105884085-105891599	Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv526898	chr11:105884085-105893494	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:105864000-105891600	Weak transcription	Colonic Mucosa	Colon
2	chr11:105865000-105890400	Weak transcription	A549	lung
3	chr11:105865200-105891600	Weak transcription	Hela-S3	cervix
4	chr11:105871000-105892200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
5	chr11:105877600-105892400	Weak transcription	Spleen	Spleen
6	chr11:105877800-105892400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr11:105878600-105892400	Weak transcription	Stomach Mucosa	stomach
8	chr11:105880600-105891600	Weak transcription	Placenta Amnion	Placenta Amnion
9	chr11:105880800-105891600	Weak transcription	Fetal Intestine Small	intestine
10	chr11:105880800-105892400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr11:105881400-105892000	Weak transcription	Fetal Muscle Trunk	muscle
12	chr11:105881600-105889800	Weak transcription	NHEK	skin
13	chr11:105881600-105890200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr11:105881600-105890200	Weak transcription	Fetal Kidney	kidney
15	chr11:105881600-105890200	Weak transcription	Stomach Smooth Muscle	stomach
16	chr11:105881600-105890800	Weak transcription	Rectal Smooth Muscle	rectum
17	chr11:105881600-105891600	Weak transcription	Fetal Intestine Large	intestine
18	chr11:105881600-105891800	Weak transcription	Rectal Mucosa Donor 31	rectum
19	chr11:105881600-105892000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
20	chr11:105881800-105889200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
21	chr11:105881800-105889200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
22	chr11:105881800-105891600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
23	chr11:105881800-105891800	Weak transcription	Rectal Mucosa Donor 29	rectum
24	chr11:105881800-105892000	Weak transcription	Primary neutrophils fromperipheralblood	blood
25	chr11:105882000-105891800	Weak transcription	Primary B cells from cord blood	blood
26	chr11:105882000-105891800	Weak transcription	Thymus	Thymus
27	chr11:105882000-105892000	Weak transcription	Aorta	Aorta
28	chr11:105882200-105889800	Weak transcription	Right Atrium	heart
29	chr11:105882200-105890200	Weak transcription	Duodenum Mucosa	Duodenum
30	chr11:105882200-105891600	Weak transcription	Primary B cells from peripheral blood	blood
31	chr11:105882200-105891800	Weak transcription	H9 Cell Line	embryonic stem cell
32	chr11:105882200-105891800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
33	chr11:105882200-105892000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
34	chr11:105882200-105892400	Weak transcription	Gastric	stomach
35	chr11:105882200-105892400	Weak transcription	Lung	lung
36	chr11:105882400-105889200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
37	chr11:105882400-105889400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
38	chr11:105882400-105890200	Weak transcription	Ovary	ovary
39	chr11:105882400-105890200	Weak transcription	K562	blood
40	chr11:105882400-105891600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
41	chr11:105882400-105891800	Weak transcription	Primary monocytes fromperipheralblood	blood
42	chr11:105882400-105891800	Weak transcription	Fetal Muscle Leg	muscle
43	chr11:105882400-105892200	Weak transcription	Placenta	Placenta
44	chr11:105882600-105891800	Weak transcription	Primary T cells fromperipheralblood	blood
45	chr11:105883000-105889600	Enhancers	Cortex derived primary cultured neurospheres	brain
46	chr11:105883600-105889200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
47	chr11:105883600-105889200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
48	chr11:105883600-105891400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
49	chr11:105883600-105891800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
50	chr11:105883800-105889000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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