Variant report

Variant	rs609665
Chromosome Location	chr11:105844065-105844066
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 61 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:61)

rs_ID	r²[population]
rs1043142	0.87[CHB][hapmap];0.94[JPT][hapmap]
rs1043144	0.83[YRI][hapmap]
rs10895885	0.85[ASN][1000 genomes]
rs10895888	0.88[ASN][1000 genomes]
rs11226875	0.88[JPT][hapmap]
rs11226880	0.94[JPT][hapmap];0.83[ASN][1000 genomes]
rs11226881	0.81[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs11226883	1.00[CHB][hapmap];0.94[JPT][hapmap];0.88[ASN][1000 genomes]
rs11226886	0.81[ASN][1000 genomes]
rs11226890	0.81[ASN][1000 genomes]
rs1144410	0.95[LWK][hapmap];0.93[YRI][hapmap]
rs11821382	1.00[CHB][hapmap];0.85[CHD][hapmap];0.91[GIH][hapmap];0.94[JPT][hapmap];0.88[ASN][1000 genomes]
rs17104835	0.93[CHB][hapmap];0.94[JPT][hapmap];0.85[ASN][1000 genomes]
rs1939152	0.81[CHB][hapmap];0.88[JPT][hapmap]
rs1939153	0.83[LWK][hapmap]
rs1939826	0.93[CHB][hapmap];0.94[JPT][hapmap];0.85[ASN][1000 genomes]
rs2000633	0.85[AFR][1000 genomes]
rs2096785	0.85[AFR][1000 genomes]
rs2186589	0.85[ASN][1000 genomes]
rs2256121	0.85[AFR][1000 genomes]
rs2509484	0.86[AFR][1000 genomes]
rs2564909	0.82[AFR][1000 genomes]
rs2564910	0.83[AFR][1000 genomes]
rs2846214	0.85[AFR][1000 genomes]
rs2846215	0.85[AFR][1000 genomes]
rs2846219	0.86[AFR][1000 genomes]
rs2847178	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2847187	0.85[AFR][1000 genomes]
rs3758792	1.00[CHB][hapmap];0.94[JPT][hapmap]
rs3758793	0.88[ASN][1000 genomes]
rs3824911	1.00[CHB][hapmap];0.84[JPT][hapmap];0.87[ASN][1000 genomes]
rs509512	0.88[ASW][hapmap];0.95[LWK][hapmap];0.92[MKK][hapmap];0.96[YRI][hapmap];0.96[AFR][1000 genomes]
rs539238	0.81[AFR][1000 genomes]
rs545184	0.81[TSI][hapmap]
rs548814	0.83[AFR][1000 genomes]
rs567161	0.96[AFR][1000 genomes]
rs571533	0.96[AFR][1000 genomes]
rs587978	0.89[LWK][hapmap];0.86[YRI][hapmap]
rs588638	0.96[AFR][1000 genomes]
rs589104	0.95[LWK][hapmap];0.93[YRI][hapmap]
rs601480	0.87[ASW][hapmap];0.95[LWK][hapmap];0.81[MKK][hapmap];0.96[YRI][hapmap];0.92[AFR][1000 genomes]
rs622178	0.95[LWK][hapmap];0.93[YRI][hapmap]
rs622367	0.96[YRI][hapmap];0.93[AFR][1000 genomes]
rs631002	0.95[LWK][hapmap];0.93[YRI][hapmap]
rs638777	0.96[YRI][hapmap];0.96[AFR][1000 genomes]
rs639003	0.96[YRI][hapmap];0.96[AFR][1000 genomes]
rs642544	0.80[TSI][hapmap]
rs645905	0.96[YRI][hapmap];0.94[AFR][1000 genomes]
rs6591144	0.80[AFR][1000 genomes]
rs667174	0.82[CHD][hapmap];0.83[JPT][hapmap];0.80[TSI][hapmap]
rs669397	0.88[ASW][hapmap];0.95[LWK][hapmap];0.92[MKK][hapmap];0.96[YRI][hapmap];0.96[AFR][1000 genomes]
rs669793	0.84[JPT][hapmap];0.96[YRI][hapmap];0.95[AFR][1000 genomes]
rs675001	0.96[AFR][1000 genomes]
rs680109	0.85[TSI][hapmap]
rs681156	0.93[YRI][hapmap]
rs694514	0.80[AFR][1000 genomes]
rs7110414	0.81[ASN][1000 genomes]
rs72979245	0.85[ASN][1000 genomes]
rs72979260	0.83[ASN][1000 genomes]
rs7943336	0.93[CHB][hapmap];0.94[JPT][hapmap];0.85[ASN][1000 genomes]
rs948297	0.83[AFR][1000 genomes]

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:105827400-105850200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr11:105839400-105845000	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr11:105843000-105850200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr11:105843800-105866400	Weak transcription	Brain Angular Gyrus	brain

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