Variant report

Variant	rs7110414
Chromosome Location	chr11:105861507-105861508
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 43 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs1043142	0.87[CHB][hapmap];0.94[JPT][hapmap];0.81[MEX][hapmap];0.80[ASN][1000 genomes]
rs10791776	0.82[EUR][1000 genomes]
rs10895881	0.82[EUR][1000 genomes]
rs10895883	0.81[EUR][1000 genomes]
rs10895885	0.98[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10895888	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10895889	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10895890	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10895891	0.86[ASN][1000 genomes]
rs11226868	0.83[CEU][hapmap];0.82[EUR][1000 genomes]
rs11226871	0.95[CEU][hapmap];0.82[EUR][1000 genomes]
rs11226875	0.88[JPT][hapmap]
rs11226880	0.95[CEU][hapmap];0.87[JPT][hapmap];0.92[YRI][hapmap];0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11226881	0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11226883	1.00[CEU][hapmap];0.87[CHB][hapmap];0.94[JPT][hapmap];0.92[YRI][hapmap];0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11226886	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11226887	0.96[ASN][1000 genomes]
rs11226890	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11226891	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11226892	0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11821382	0.85[ASW][hapmap];1.00[CEU][hapmap];0.87[CHB][hapmap];0.93[CHD][hapmap];1.00[GIH][hapmap];0.94[JPT][hapmap];0.90[LWK][hapmap];1.00[MEX][hapmap];0.92[MKK][hapmap];1.00[TSI][hapmap];0.92[YRI][hapmap];0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1267444	0.80[LWK][hapmap]
rs17104835	0.84[CEU][hapmap];0.80[CHB][hapmap];0.86[CHD][hapmap];0.94[JPT][hapmap];0.94[MEX][hapmap];0.89[ASN][1000 genomes]
rs1939152	0.88[JPT][hapmap]
rs1939826	0.84[CEU][hapmap];0.80[CHB][hapmap];0.94[JPT][hapmap];0.89[ASN][1000 genomes]
rs2155022	0.82[EUR][1000 genomes]
rs2155337	0.92[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2186589	0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2847178	0.83[ASN][1000 genomes]
rs3758790	0.85[LWK][hapmap];0.81[YRI][hapmap];0.83[AFR][1000 genomes]
rs3758792	1.00[CEU][hapmap];0.87[CHB][hapmap];0.94[JPT][hapmap];0.84[YRI][hapmap]
rs3758793	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3824911	1.00[CEU][hapmap];0.93[CHB][hapmap];0.84[JPT][hapmap];0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs505829	0.80[LWK][hapmap]
rs56073265	0.82[EUR][1000 genomes]
rs583452	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs593130	0.80[LWK][hapmap]
rs609665	0.87[CHB][hapmap];0.91[GIH][hapmap];0.88[JPT][hapmap];0.81[ASN][1000 genomes]
rs656292	0.81[YRI][hapmap]
rs72979245	0.89[ASN][1000 genomes]
rs72979260	0.91[ASN][1000 genomes]
rs7936460	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7943336	0.84[CEU][hapmap];0.80[CHB][hapmap];0.94[JPT][hapmap];0.81[AMR][1000 genomes];0.89[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7110414	SSR2	trans	parietal	SCAN

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:105843800-105866400	Weak transcription	Brain Angular Gyrus	brain
2	chr11:105848200-105880400	Weak transcription	Fetal Brain Male	brain
3	chr11:105849800-105866600	Weak transcription	Brain Substantia Nigra	brain
4	chr11:105851400-105862600	Weak transcription	Cortex derived primary cultured neurospheres	brain
5	chr11:105851400-105864000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr11:105854600-105865000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr11:105857800-105866600	Weak transcription	Fetal Lung	lung
8	chr11:105858200-105864000	Weak transcription	Brain Germinal Matrix	brain
9	chr11:105860000-105863800	Weak transcription	Fetal Brain Female	brain
10	chr11:105860000-105876400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr11:105860000-105876400	Weak transcription	Muscle Satellite Cultured Cells	--
12	chr11:105860200-105866400	Weak transcription	Skeletal Muscle Male	skeletal muscle
13	chr11:105860400-105863800	Weak transcription	Brain Anterior Caudate	brain
14	chr11:105860400-105864200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr11:105860400-105874200	Weak transcription	H1 Cell Line	embryonic stem cell
16	chr11:105860600-105862800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
17	chr11:105860600-105863000	Weak transcription	HUES48 Cell Line	embryonic stem cell
18	chr11:105860600-105866600	Weak transcription	HUES6 Cell Line	embryonic stem cell
19	chr11:105860800-105862600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
20	chr11:105860800-105864600	Weak transcription	HUES64 Cell Line	embryonic stem cell
21	chr11:105861200-105866600	Weak transcription	Skeletal Muscle Female	skeletal muscle
22	chr11:105861200-105879200	Weak transcription	HMEC	breast
23	chr11:105861400-105861600	Enhancers	H9 Cell Line	embryonic stem cell
24	chr11:105861400-105866600	Weak transcription	Esophagus	oesophagus

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