Variant report

Variant	rs11226868
Chromosome Location	chr11:105735093-105735094
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10791776	1.00[CHB][hapmap];0.91[JPT][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10895881	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10895883	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10895885	0.86[EUR][1000 genomes]
rs10895888	0.80[EUR][1000 genomes]
rs10895889	0.82[EUR][1000 genomes]
rs10895890	0.82[EUR][1000 genomes]
rs11226871	0.92[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11226880	0.84[CEU][hapmap];0.83[EUR][1000 genomes]
rs11226881	0.82[EUR][1000 genomes]
rs11226883	0.85[CEU][hapmap];0.83[EUR][1000 genomes]
rs11226886	0.82[EUR][1000 genomes]
rs11226890	0.82[EUR][1000 genomes]
rs11226891	0.82[EUR][1000 genomes]
rs11226892	0.82[EUR][1000 genomes]
rs11821382	0.83[CEU][hapmap];0.80[EUR][1000 genomes]
rs11827884	1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs1258578	0.83[ASN][1000 genomes]
rs1892877	1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs2155022	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2155337	0.82[EUR][1000 genomes]
rs2186589	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs3758792	0.84[CEU][hapmap]
rs3758793	0.80[EUR][1000 genomes]
rs3758796	1.00[JPT][hapmap]
rs3824911	0.82[CEU][hapmap];0.82[EUR][1000 genomes]
rs545184	1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs56073265	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs56091908	0.83[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs57375419	0.83[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs583452	0.84[EUR][1000 genomes]
rs597542	0.83[ASN][1000 genomes]
rs642544	1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs657530	1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs680109	1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs683505	0.83[ASN][1000 genomes]
rs7110414	0.82[EUR][1000 genomes]
rs7936460	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832257	chr11:105662753-105817576	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	esv1825856	chr11:105672706-105775768	Active TSS Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	esv1825993	chr11:105698982-105762601	Enhancers Weak transcription Strong transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:105705200-105764600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr11:105728800-105738000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr11:105730000-105739400	Weak transcription	Brain Angular Gyrus	brain
4	chr11:105730400-105738600	Weak transcription	Brain Cingulate Gyrus	brain
5	chr11:105734000-105736400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr11:105734000-105737600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
7	chr11:105734600-105737600	Weak transcription	HUES48 Cell Line	embryonic stem cell
8	chr11:105734600-105737600	Weak transcription	HUES64 Cell Line	embryonic stem cell
9	chr11:105734600-105737600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
10	chr11:105734600-105737800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
11	chr11:105734600-105738600	Weak transcription	Brain Inferior Temporal Lobe	brain
12	chr11:105734600-105738600	Weak transcription	Brain Substantia Nigra	brain
13	chr11:105735000-105738800	Weak transcription	Cortex derived primary cultured neurospheres	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links