Variant report

Variant	rs3758796
Chromosome Location	chr11:105794908-105794909
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10791776	0.82[JPT][hapmap]
rs10895881	0.83[ASN][1000 genomes]
rs11226868	1.00[JPT][hapmap]
rs11226871	1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs11827884	1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs1892877	0.92[JPT][hapmap]
rs1939152	0.84[CHB][hapmap]
rs545184	0.93[JPT][hapmap]
rs56073265	0.83[ASN][1000 genomes]
rs56091908	0.82[ASN][1000 genomes]
rs57375419	0.82[ASN][1000 genomes]
rs642544	0.93[JPT][hapmap]
rs657530	0.92[JPT][hapmap]
rs680109	0.93[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832257	chr11:105662753-105817576	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv976504	chr11:105791898-105795864	Strong transcription Enhancers Flanking Active TSS Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:105792400-105797000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr11:105793000-105795600	Enhancers	Fetal Lung	lung
3	chr11:105793600-105795200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr11:105793800-105795000	Enhancers	Brain Cingulate Gyrus	brain
5	chr11:105793800-105795400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr11:105793800-105795400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr11:105793800-105795400	Enhancers	Brain Angular Gyrus	brain
8	chr11:105793800-105795400	Enhancers	Brain Substantia Nigra	brain
9	chr11:105793800-105795600	Enhancers	Cortex derived primary cultured neurospheres	brain
10	chr11:105793800-105795600	Enhancers	Brain Inferior Temporal Lobe	brain
11	chr11:105793800-105795600	Enhancers	Fetal Brain Male	brain
12	chr11:105794000-105795200	Enhancers	Muscle Satellite Cultured Cells	--
13	chr11:105794000-105795600	Enhancers	Fetal Brain Female	brain
14	chr11:105794200-105795400	Enhancers	Fetal Stomach	stomach
15	chr11:105794400-105795600	Enhancers	Brain Hippocampus Middle	brain
16	chr11:105794600-105795000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
17	chr11:105794600-105797200	Enhancers	HUES48 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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