Variant report

Variant	rs2846219
Chromosome Location	chr11:105858539-105858540
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:105847874..105851382-chr11:105852371..105858988,6	K562	blood:

Extended variants
information (count: 61 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:61)

rs_ID	r²[population]
rs1147065	0.81[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs1262357	0.81[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs1267444	0.81[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs1939800	0.81[ASN][1000 genomes]
rs2000633	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2096785	0.98[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2155338	0.84[AMR][1000 genomes];0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2256121	0.98[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2509484	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2564909	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2564910	0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2846214	0.98[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2846215	0.98[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2847178	0.81[AFR][1000 genomes]
rs2847187	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3758790	0.80[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs471396	0.81[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs471795	0.81[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs505829	0.81[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs507450	0.81[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs509512	0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs511106	0.81[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs513947	0.81[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs534844	0.84[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs539238	0.90[ASN][1000 genomes]
rs548814	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs556968	0.84[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs561643	0.84[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs562546	0.83[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs567161	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs571533	0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs588638	0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs589104	0.82[ASN][1000 genomes]
rs589574	0.80[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs592656	0.80[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs593130	0.81[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs601480	0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs604545	0.83[ASN][1000 genomes]
rs609235	0.83[ASN][1000 genomes]
rs609665	0.86[AFR][1000 genomes]
rs619323	0.84[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs622367	0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs638777	0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs639003	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs640988	0.81[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs641574	0.81[ASN][1000 genomes]
rs645905	0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs654035	0.81[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs656292	0.81[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs6591144	0.86[AMR][1000 genomes];0.80[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs659840	0.81[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs660278	0.81[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs665554	0.84[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs669397	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs669793	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs675001	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs677315	0.84[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs684470	0.81[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs694514	0.90[ASN][1000 genomes]
rs7116046	0.80[AMR][1000 genomes]
rs948297	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:105843800-105866400	Weak transcription	Brain Angular Gyrus	brain
2	chr11:105848200-105880400	Weak transcription	Fetal Brain Male	brain
3	chr11:105849800-105866600	Weak transcription	Brain Substantia Nigra	brain
4	chr11:105851400-105862600	Weak transcription	Cortex derived primary cultured neurospheres	brain
5	chr11:105851400-105864000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr11:105854600-105865000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr11:105857800-105866600	Weak transcription	Fetal Lung	lung
8	chr11:105858200-105864000	Weak transcription	Brain Germinal Matrix	brain

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