Variant report

Variant	rs2096785
Chromosome Location	chr11:105873403-105873404
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:105872692..105874858-chr11:105877960..105880174,2	K562	blood:
2	chr11:105872692..105874858-chr11:105876640..105880174,4	K562	blood:

Extended variants
information (count: 73 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:73)

rs_ID	r²[population]
rs1043144	0.94[ASW][hapmap];0.88[CEU][hapmap];0.86[CHB][hapmap];0.91[MEX][hapmap];0.85[MKK][hapmap];0.93[YRI][hapmap]
rs11226908	0.84[CHB][hapmap];0.83[JPT][hapmap]
rs1144410	0.86[CHD][hapmap];0.89[GIH][hapmap];0.84[JPT][hapmap];0.93[LWK][hapmap];0.89[YRI][hapmap]
rs1147065	0.82[ASN][1000 genomes]
rs1262357	0.81[ASN][1000 genomes]
rs1267444	0.84[CHB][hapmap];0.88[CHD][hapmap];0.89[GIH][hapmap];0.90[JPT][hapmap];0.82[ASN][1000 genomes]
rs1939153	0.85[JPT][hapmap];0.80[LWK][hapmap]
rs1939800	0.84[CHB][hapmap];0.81[GIH][hapmap];0.90[JPT][hapmap]
rs1939810	0.86[CHB][hapmap]
rs2000633	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2155338	0.81[CEU][hapmap];0.84[CHB][hapmap];0.84[JPT][hapmap];0.82[ASN][1000 genomes]
rs2256121	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2509484	0.98[AFR][1000 genomes];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2564909	0.97[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2564910	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2846214	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2846215	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2846219	0.98[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2846221	0.81[ASW][hapmap];0.80[CHB][hapmap]
rs2847178	0.82[AFR][1000 genomes]
rs2847187	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3758790	0.84[CHB][hapmap];0.86[CHD][hapmap];0.91[GIH][hapmap];0.90[JPT][hapmap];0.82[ASN][1000 genomes]
rs471396	0.90[CHB][hapmap];0.90[JPT][hapmap];0.82[ASN][1000 genomes]
rs471795	0.84[CHB][hapmap];0.89[JPT][hapmap];0.82[ASN][1000 genomes]
rs505829	0.84[CHB][hapmap];0.86[CHD][hapmap];0.91[GIH][hapmap];0.90[JPT][hapmap];0.82[ASN][1000 genomes]
rs507450	0.84[CHB][hapmap];0.90[JPT][hapmap];0.82[ASN][1000 genomes]
rs509512	0.83[ASW][hapmap];0.84[CEU][hapmap];0.84[CHB][hapmap];0.93[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.93[LWK][hapmap];0.95[MEX][hapmap];0.87[MKK][hapmap];0.93[TSI][hapmap];0.93[YRI][hapmap];0.88[AFR][1000 genomes];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs511106	0.94[JPT][hapmap];0.82[ASN][1000 genomes]
rs513947	0.83[ASN][1000 genomes]
rs534844	0.82[ASN][1000 genomes]
rs539238	0.89[ASN][1000 genomes]
rs541640	0.84[CHB][hapmap];0.90[JPT][hapmap]
rs548814	0.86[ASN][1000 genomes]
rs556968	0.84[CHB][hapmap];0.90[JPT][hapmap];0.82[ASN][1000 genomes]
rs561643	0.84[CHB][hapmap];0.90[JPT][hapmap];0.82[ASN][1000 genomes]
rs562546	0.82[ASN][1000 genomes]
rs567161	0.88[AFR][1000 genomes];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs571533	0.88[AFR][1000 genomes];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs582479	0.88[CHB][hapmap]
rs587978	0.82[ASW][hapmap];0.89[GIH][hapmap];0.84[JPT][hapmap];0.89[LWK][hapmap];0.82[YRI][hapmap]
rs588638	0.88[AFR][1000 genomes];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs589104	0.86[CHD][hapmap];0.89[GIH][hapmap];0.90[JPT][hapmap];0.93[LWK][hapmap];0.80[TSI][hapmap];0.89[YRI][hapmap];0.81[ASN][1000 genomes]
rs589574	0.82[ASN][1000 genomes]
rs592656	0.82[ASN][1000 genomes]
rs593130	0.84[CHB][hapmap];0.86[CHD][hapmap];0.91[GIH][hapmap];0.90[JPT][hapmap];0.82[ASN][1000 genomes]
rs596100	0.84[CHD][hapmap]
rs601480	0.82[ASW][hapmap];0.80[CEU][hapmap];0.84[CHB][hapmap];0.93[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.95[LWK][hapmap];0.95[MEX][hapmap];0.93[TSI][hapmap];0.93[YRI][hapmap];0.85[AFR][1000 genomes];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs604545	0.82[ASN][1000 genomes]
rs609235	0.84[CHB][hapmap];0.84[CHD][hapmap];0.89[GIH][hapmap];0.90[JPT][hapmap];0.81[ASN][1000 genomes]
rs609665	0.89[LWK][hapmap];0.89[YRI][hapmap];0.85[AFR][1000 genomes]
rs619323	0.84[CHB][hapmap];0.86[CHD][hapmap];0.91[GIH][hapmap];0.90[JPT][hapmap];0.82[ASN][1000 genomes]
rs622178	0.86[CHD][hapmap];0.89[GIH][hapmap];0.84[JPT][hapmap];0.93[LWK][hapmap];0.89[YRI][hapmap]
rs622367	0.83[CEU][hapmap];0.84[CHB][hapmap];0.95[JPT][hapmap];0.92[YRI][hapmap];0.88[AFR][1000 genomes];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs631002	0.89[GIH][hapmap];0.84[JPT][hapmap];0.93[LWK][hapmap];0.89[YRI][hapmap]
rs638777	0.82[CHB][hapmap];0.94[JPT][hapmap];0.92[YRI][hapmap];0.88[AFR][1000 genomes];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs639003	0.84[CEU][hapmap];0.84[CHB][hapmap];0.95[JPT][hapmap];0.93[YRI][hapmap];0.88[AFR][1000 genomes];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs641574	0.84[CHB][hapmap];0.81[CHD][hapmap];0.81[GIH][hapmap];0.90[JPT][hapmap]
rs645905	0.84[CEU][hapmap];0.84[CHB][hapmap];0.95[JPT][hapmap];0.93[YRI][hapmap];0.90[AFR][1000 genomes];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs654035	0.84[CHB][hapmap];0.90[JPT][hapmap];0.82[ASN][1000 genomes]
rs656292	0.84[CHB][hapmap];0.90[JPT][hapmap];0.82[ASN][1000 genomes]
rs6591144	0.86[ASN][1000 genomes]
rs659840	0.82[ASN][1000 genomes]
rs660278	0.82[ASN][1000 genomes]
rs665554	0.84[CHB][hapmap];0.90[JPT][hapmap];0.82[ASN][1000 genomes]
rs669397	0.83[ASW][hapmap];0.84[CEU][hapmap];0.84[CHB][hapmap];0.93[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.93[LWK][hapmap];0.95[MEX][hapmap];0.87[MKK][hapmap];0.93[TSI][hapmap];0.93[YRI][hapmap];0.88[AFR][1000 genomes];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs669793	0.84[CEU][hapmap];0.84[CHB][hapmap];0.94[JPT][hapmap];0.93[YRI][hapmap];0.88[AFR][1000 genomes];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs675001	0.88[AFR][1000 genomes];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs677315	0.82[ASN][1000 genomes]
rs681156	0.84[JPT][hapmap];0.89[YRI][hapmap]
rs684470	0.82[ASN][1000 genomes]
rs685725	0.85[JPT][hapmap]
rs694514	0.89[ASN][1000 genomes]
rs948297	0.98[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]

No data

Chromatin state (count:113 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:105848200-105880400	Weak transcription	Fetal Brain Male	brain
2	chr11:105860000-105876400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr11:105860000-105876400	Weak transcription	Muscle Satellite Cultured Cells	--
4	chr11:105860400-105874200	Weak transcription	H1 Cell Line	embryonic stem cell
5	chr11:105861200-105879200	Weak transcription	HMEC	breast
6	chr11:105862800-105883400	Weak transcription	Psoas Muscle	Psoas
7	chr11:105863000-105876600	Weak transcription	Fetal Kidney	kidney
8	chr11:105863000-105880200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
9	chr11:105864000-105891600	Weak transcription	Colonic Mucosa	Colon
10	chr11:105864600-105876600	Weak transcription	HSMMtube	muscle
11	chr11:105865000-105876600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
12	chr11:105865000-105890400	Weak transcription	A549	lung
13	chr11:105865200-105874600	Weak transcription	Duodenum Mucosa	Duodenum
14	chr11:105865200-105876800	Weak transcription	Colon Smooth Muscle	Colon
15	chr11:105865200-105891600	Weak transcription	Hela-S3	cervix
16	chr11:105865400-105874200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
17	chr11:105865400-105874200	Weak transcription	Placenta	Placenta
18	chr11:105865400-105874400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
19	chr11:105865400-105876600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
20	chr11:105865400-105876600	Weak transcription	Small Intestine	intestine
21	chr11:105865400-105880200	Weak transcription	Rectal Smooth Muscle	rectum
22	chr11:105865600-105874200	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
23	chr11:105865600-105875800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
24	chr11:105865800-105879800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
25	chr11:105866000-105879800	Weak transcription	HUVEC	blood vessel
26	chr11:105866200-105876400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
27	chr11:105866400-105876400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr11:105867000-105874200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
29	chr11:105867000-105874200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
30	chr11:105867000-105876400	Weak transcription	Skeletal Muscle Male	skeletal muscle
31	chr11:105867200-105874000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
32	chr11:105867200-105874000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
33	chr11:105867200-105874200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
34	chr11:105867200-105874600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
35	chr11:105867200-105874600	Weak transcription	Fetal Lung	lung
36	chr11:105867200-105876400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
37	chr11:105867200-105876400	Weak transcription	Rectal Mucosa Donor 29	rectum
38	chr11:105867200-105876600	Weak transcription	NHDF-Ad	bronchial
39	chr11:105867200-105876800	Weak transcription	Osteobl	bone
40	chr11:105867200-105877600	Weak transcription	Skeletal Muscle Female	skeletal muscle
41	chr11:105867200-105879600	Weak transcription	NHLF	lung
42	chr11:105867400-105874000	Weak transcription	HUES64 Cell Line	embryonic stem cell
43	chr11:105867400-105874000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
44	chr11:105867400-105874000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
45	chr11:105867400-105874000	Weak transcription	Left Ventricle	heart
46	chr11:105867400-105874200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
47	chr11:105867400-105874200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
48	chr11:105867400-105874200	Weak transcription	Primary T helper cells PMA-I stimulated	--
49	chr11:105867400-105874200	Weak transcription	Gastric	stomach
50	chr11:105867400-105874400	Weak transcription	Primary B cells from peripheral blood	blood

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