Variant report

Variant	rs587978
Chromosome Location	chr11:105801770-105801771
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs11226908	0.83[JPT][hapmap]
rs1144410	1.00[ASW][hapmap];0.92[CEU][hapmap];0.90[CHB][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.93[LWK][hapmap];0.94[MKK][hapmap];0.89[TSI][hapmap];0.85[YRI][hapmap];0.92[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1267444	0.84[CHB][hapmap];0.84[JPT][hapmap]
rs1939153	0.83[ASW][hapmap];0.80[GIH][hapmap];0.90[JPT][hapmap];0.84[LWK][hapmap];0.88[MKK][hapmap];0.89[TSI][hapmap];0.81[YRI][hapmap];0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1939800	0.84[CHB][hapmap];0.87[GIH][hapmap];0.84[JPT][hapmap]
rs2155338	0.85[CHB][hapmap]
rs3758790	0.84[CHB][hapmap];0.80[GIH][hapmap];0.84[JPT][hapmap]
rs471396	0.85[CHB][hapmap];0.84[JPT][hapmap]
rs471795	0.85[CHB][hapmap];0.83[JPT][hapmap]
rs505829	0.84[CHB][hapmap];0.80[GIH][hapmap];0.84[JPT][hapmap]
rs507450	0.85[CHB][hapmap];0.85[JPT][hapmap]
rs509512	0.82[ASW][hapmap];0.85[CEU][hapmap];0.84[CHB][hapmap];0.89[GIH][hapmap];0.89[JPT][hapmap];0.93[LWK][hapmap];0.81[MKK][hapmap];0.84[TSI][hapmap];0.89[YRI][hapmap];0.85[ASN][1000 genomes]
rs511106	0.84[JPT][hapmap]
rs539238	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs541640	0.85[CHB][hapmap];0.85[JPT][hapmap]
rs548814	0.87[AFR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs556968	0.85[CHB][hapmap];0.85[JPT][hapmap]
rs561643	0.85[CHB][hapmap];0.84[JPT][hapmap]
rs567161	0.85[ASN][1000 genomes]
rs571533	0.85[ASN][1000 genomes]
rs582479	0.87[CHB][hapmap];0.82[AMR][1000 genomes]
rs588638	0.85[ASN][1000 genomes]
rs589104	0.88[ASW][hapmap];0.96[CEU][hapmap];0.95[CHB][hapmap];0.95[GIH][hapmap];0.95[JPT][hapmap];0.93[LWK][hapmap];0.86[MKK][hapmap];0.98[TSI][hapmap];0.86[YRI][hapmap];0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs593130	0.84[CHB][hapmap];0.80[GIH][hapmap];0.84[JPT][hapmap]
rs596100	0.85[CHB][hapmap];0.82[GIH][hapmap];0.81[ASN][1000 genomes]
rs601480	0.81[ASW][hapmap];0.81[CEU][hapmap];0.84[CHB][hapmap];0.88[GIH][hapmap];0.89[JPT][hapmap];0.93[LWK][hapmap];0.84[TSI][hapmap];0.89[YRI][hapmap];0.80[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs609235	0.84[CHB][hapmap];0.84[JPT][hapmap]
rs609665	0.89[LWK][hapmap];0.86[YRI][hapmap]
rs619323	0.84[CHB][hapmap];0.80[GIH][hapmap];0.84[JPT][hapmap]
rs622178	1.00[ASW][hapmap];0.92[CEU][hapmap];0.90[CHB][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.93[LWK][hapmap];0.94[MKK][hapmap];0.89[TSI][hapmap];0.85[YRI][hapmap];0.92[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs622367	0.84[CEU][hapmap];0.85[CHB][hapmap];0.90[JPT][hapmap];0.88[YRI][hapmap];0.84[ASN][1000 genomes]
rs631002	1.00[ASW][hapmap];0.92[CEU][hapmap];0.90[CHB][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.93[LWK][hapmap];0.94[MKK][hapmap];0.89[TSI][hapmap];0.85[YRI][hapmap];0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs638777	0.81[CEU][hapmap];0.83[CHB][hapmap];0.89[JPT][hapmap];0.88[YRI][hapmap];0.85[ASN][1000 genomes]
rs639003	0.84[CEU][hapmap];0.90[CHB][hapmap];0.89[JPT][hapmap];0.89[YRI][hapmap];0.85[ASN][1000 genomes]
rs641574	0.84[CHB][hapmap];0.87[GIH][hapmap];0.84[JPT][hapmap];0.82[AMR][1000 genomes]
rs645905	0.84[CEU][hapmap];0.85[CHB][hapmap];0.90[JPT][hapmap];0.89[YRI][hapmap];0.85[ASN][1000 genomes]
rs649098	0.82[GIH][hapmap];0.84[TSI][hapmap]
rs654035	0.85[CHB][hapmap];0.85[JPT][hapmap]
rs656292	0.85[CHB][hapmap];0.85[JPT][hapmap]
rs6591144	0.84[EUR][1000 genomes]
rs665554	0.85[CHB][hapmap];0.85[JPT][hapmap]
rs669397	0.82[ASW][hapmap];0.85[CEU][hapmap];0.84[CHB][hapmap];0.89[GIH][hapmap];0.89[JPT][hapmap];0.93[LWK][hapmap];0.81[MKK][hapmap];0.84[TSI][hapmap];0.89[YRI][hapmap];0.84[ASN][1000 genomes]
rs669793	0.85[CEU][hapmap];0.85[CHB][hapmap];0.89[JPT][hapmap];0.89[YRI][hapmap];0.85[ASN][1000 genomes]
rs675001	0.85[ASN][1000 genomes]
rs681156	0.91[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.93[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs685725	0.92[CEU][hapmap];0.90[JPT][hapmap];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs694514	0.96[CEU][hapmap];0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832257	chr11:105662753-105817576	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:105795000-105804600	Weak transcription	Brain Cingulate Gyrus	brain
2	chr11:105795200-105806800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chr11:105795400-105805600	Weak transcription	Brain Substantia Nigra	brain
4	chr11:105795600-105805600	Weak transcription	Brain Inferior Temporal Lobe	brain
5	chr11:105797200-105806400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
6	chr11:105799400-105810200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr11:105800600-105805600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr11:105801000-105802400	Weak transcription	Muscle Satellite Cultured Cells	--
9	chr11:105801000-105805400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr11:105801000-105805600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
11	chr11:105801000-105806400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr11:105801000-105806400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr11:105801000-105806400	Weak transcription	Hela-S3	cervix
14	chr11:105801200-105805200	Weak transcription	Cortex derived primary cultured neurospheres	brain
15	chr11:105801200-105805200	Weak transcription	Fetal Lung	lung
16	chr11:105801200-105806200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr11:105801600-105807400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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