Variant report

Variant	rs685725
Chromosome Location	chr11:105754802-105754803
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs11226908	0.82[JPT][hapmap]
rs1144410	0.92[CEU][hapmap];0.86[CHB][hapmap];0.89[JPT][hapmap];0.85[YRI][hapmap];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1267444	0.83[JPT][hapmap]
rs1939153	0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1939800	0.83[JPT][hapmap]
rs2155338	0.83[JPT][hapmap]
rs3758790	0.83[JPT][hapmap]
rs471396	0.89[JPT][hapmap]
rs471795	0.82[JPT][hapmap]
rs505829	0.83[JPT][hapmap]
rs507450	0.84[JPT][hapmap]
rs509512	0.84[CEU][hapmap];0.89[JPT][hapmap];0.81[YRI][hapmap]
rs511106	0.89[JPT][hapmap]
rs539238	0.91[EUR][1000 genomes]
rs541640	0.84[JPT][hapmap]
rs548814	0.85[EUR][1000 genomes]
rs556968	0.84[JPT][hapmap]
rs561643	0.84[JPT][hapmap]
rs582479	0.93[JPT][hapmap]
rs587978	0.92[CEU][hapmap];0.90[JPT][hapmap];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs589104	0.96[CEU][hapmap];0.94[JPT][hapmap];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs593130	0.83[JPT][hapmap]
rs596100	0.81[CHB][hapmap]
rs601480	0.81[CEU][hapmap];0.89[JPT][hapmap];0.81[YRI][hapmap]
rs609235	0.83[JPT][hapmap]
rs619323	0.83[JPT][hapmap]
rs622178	0.92[CEU][hapmap];0.86[CHB][hapmap];0.89[JPT][hapmap];0.85[YRI][hapmap];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs622367	0.84[CEU][hapmap];0.90[JPT][hapmap];0.81[YRI][hapmap]
rs631002	0.92[CEU][hapmap];0.86[CHB][hapmap];0.89[JPT][hapmap];0.85[YRI][hapmap];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs637569	0.80[CHB][hapmap]
rs638777	0.82[CEU][hapmap];0.94[JPT][hapmap];0.88[YRI][hapmap]
rs639003	0.85[CEU][hapmap];0.90[JPT][hapmap]
rs641574	0.83[JPT][hapmap]
rs645905	0.85[CEU][hapmap];0.90[JPT][hapmap]
rs649098	0.86[CHB][hapmap];0.83[JPT][hapmap];0.80[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs654035	0.84[JPT][hapmap]
rs656292	0.84[JPT][hapmap]
rs665554	0.84[JPT][hapmap]
rs669397	0.84[CEU][hapmap];0.89[JPT][hapmap];0.81[YRI][hapmap]
rs669793	0.85[CEU][hapmap];0.89[JPT][hapmap]
rs681156	0.92[CEU][hapmap];0.86[CHB][hapmap];0.90[JPT][hapmap];0.86[YRI][hapmap];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs694514	0.96[CEU][hapmap];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832257	chr11:105662753-105817576	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	esv1825856	chr11:105672706-105775768	Active TSS Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	esv1825993	chr11:105698982-105762601	Enhancers Weak transcription Strong transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:105705200-105764600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr11:105747600-105766400	Weak transcription	Cortex derived primary cultured neurospheres	brain

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