Variant report

Variant	rs582479
Chromosome Location	chr11:105812436-105812437
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 58 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:57)

rs_ID	r²[population]
rs11226908	0.81[CHB][hapmap];0.85[JPT][hapmap]
rs1147065	0.94[ASN][1000 genomes]
rs11821382	0.81[YRI][hapmap]
rs1262357	0.81[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs1267444	1.00[CHB][hapmap];0.92[JPT][hapmap];0.95[YRI][hapmap];0.81[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs17104770	0.88[AFR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1939153	0.92[JPT][hapmap]
rs1939800	0.94[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];0.90[YRI][hapmap];0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2155338	1.00[CHB][hapmap];0.92[JPT][hapmap];0.96[YRI][hapmap];0.94[ASN][1000 genomes]
rs2186589	0.83[AFR][1000 genomes]
rs3758790	1.00[CHB][hapmap];0.92[JPT][hapmap];0.86[YRI][hapmap];0.94[ASN][1000 genomes]
rs471396	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.81[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs471795	1.00[CHB][hapmap];0.92[JPT][hapmap];0.94[ASN][1000 genomes]
rs505829	1.00[CHB][hapmap];0.92[JPT][hapmap];0.95[YRI][hapmap];0.94[ASN][1000 genomes]
rs507450	1.00[CHB][hapmap];0.93[JPT][hapmap];0.96[YRI][hapmap];0.81[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs509512	1.00[CHB][hapmap];0.86[JPT][hapmap];0.84[ASN][1000 genomes]
rs511106	0.93[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.81[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs513947	0.93[ASN][1000 genomes]
rs534844	0.81[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs539238	0.84[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs541640	1.00[CHB][hapmap];0.93[JPT][hapmap];0.95[YRI][hapmap]
rs548814	0.84[ASN][1000 genomes]
rs556968	1.00[CHB][hapmap];0.93[JPT][hapmap];0.96[YRI][hapmap];0.81[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs561643	1.00[CHB][hapmap];0.93[JPT][hapmap];0.95[YRI][hapmap];0.81[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs562546	0.94[ASN][1000 genomes]
rs567161	0.84[ASN][1000 genomes]
rs571533	0.84[ASN][1000 genomes]
rs587978	0.87[CHB][hapmap];0.82[AMR][1000 genomes]
rs588638	0.84[ASN][1000 genomes]
rs589104	0.93[CHB][hapmap];0.86[JPT][hapmap];0.86[AMR][1000 genomes]
rs589574	0.94[ASN][1000 genomes]
rs592656	0.94[ASN][1000 genomes]
rs593130	1.00[CHB][hapmap];0.92[JPT][hapmap];0.95[YRI][hapmap];0.94[ASN][1000 genomes]
rs601480	1.00[CHB][hapmap];0.86[JPT][hapmap];0.84[ASN][1000 genomes]
rs604545	0.94[ASN][1000 genomes]
rs609235	1.00[CHB][hapmap];0.92[JPT][hapmap];0.95[YRI][hapmap];0.93[ASN][1000 genomes]
rs619323	1.00[CHB][hapmap];0.92[JPT][hapmap];0.95[YRI][hapmap];0.81[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs622367	1.00[CHB][hapmap];0.86[JPT][hapmap];0.83[ASN][1000 genomes]
rs638777	1.00[CHB][hapmap];0.92[JPT][hapmap];0.84[ASN][1000 genomes]
rs639003	1.00[CHB][hapmap];0.86[JPT][hapmap];0.84[ASN][1000 genomes]
rs640988	0.95[YRI][hapmap];0.92[ASN][1000 genomes]
rs641574	0.94[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs645905	1.00[CHB][hapmap];0.86[JPT][hapmap];0.84[ASN][1000 genomes]
rs654035	1.00[CHB][hapmap];0.93[JPT][hapmap];0.96[YRI][hapmap];0.94[ASN][1000 genomes]
rs656292	1.00[CHB][hapmap];0.93[JPT][hapmap];0.95[YRI][hapmap];0.94[ASN][1000 genomes]
rs659840	0.94[ASN][1000 genomes]
rs660278	0.94[ASN][1000 genomes]
rs665554	1.00[CHB][hapmap];0.93[JPT][hapmap];0.96[YRI][hapmap];0.81[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs669397	1.00[CHB][hapmap];0.86[JPT][hapmap];0.83[ASN][1000 genomes]
rs669793	1.00[CHB][hapmap];0.85[JPT][hapmap];0.84[ASN][1000 genomes]
rs675001	0.84[ASN][1000 genomes]
rs675084	0.94[AFR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs677315	0.94[ASN][1000 genomes]
rs684470	0.94[ASN][1000 genomes]
rs685725	0.93[JPT][hapmap]
rs694514	0.86[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs7116046	0.82[AFR][1000 genomes];0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832257	chr11:105662753-105817576	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:105807600-105815800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr11:105807600-105819400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr11:105807800-105812600	Weak transcription	Brain Angular Gyrus	brain
4	chr11:105807800-105813800	Weak transcription	Brain Hippocampus Middle	brain
5	chr11:105808400-105813200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr11:105808800-105813400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr11:105808800-105813600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr11:105808800-105813800	Weak transcription	Brain Anterior Caudate	brain
9	chr11:105808800-105816800	Weak transcription	HUES48 Cell Line	embryonic stem cell
10	chr11:105808800-105816800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
11	chr11:105811000-105816000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
12	chr11:105812200-105814400	Enhancers	Fetal Lung	lung
13	chr11:105812400-105812800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
14	chr11:105812400-105813000	Enhancers	Cortex derived primary cultured neurospheres	brain
15	chr11:105812400-105813000	Enhancers	Brain Inferior Temporal Lobe	brain
16	chr11:105812400-105813400	Enhancers	Adipose Nuclei	Adipose
17	chr11:105812400-105814000	Enhancers	Brain Cingulate Gyrus	brain
18	chr11:105812400-105814000	Enhancers	Brain Substantia Nigra	brain

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