Variant report

Variant	rs513947
Chromosome Location	chr11:105837487-105837488
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 68 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:68)

rs_ID	r²[population]
rs10895888	0.82[AFR][1000 genomes]
rs11226881	0.87[AFR][1000 genomes]
rs1147065	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11821382	0.83[AFR][1000 genomes]
rs1262357	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1267444	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1271110	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs17104770	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1939800	0.95[ASN][1000 genomes]
rs2000633	0.81[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs2096785	0.83[ASN][1000 genomes]
rs2155338	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.84[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2256121	0.83[ASN][1000 genomes]
rs2435294	0.82[AMR][1000 genomes]
rs2509484	0.85[ASN][1000 genomes]
rs2564909	0.85[ASN][1000 genomes]
rs2564910	0.83[ASN][1000 genomes]
rs2846214	0.83[ASN][1000 genomes]
rs2846215	0.82[ASN][1000 genomes]
rs2846219	0.81[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs2847187	0.85[ASN][1000 genomes]
rs3758790	0.91[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3758793	0.83[AFR][1000 genomes]
rs3824911	0.88[AFR][1000 genomes]
rs471396	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs471795	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs505829	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs507450	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs509512	0.85[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs511106	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs534844	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs539238	0.86[ASN][1000 genomes]
rs548814	0.83[ASN][1000 genomes]
rs556968	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs561643	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs562546	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs567161	0.85[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs571533	0.85[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs582479	0.93[ASN][1000 genomes]
rs588638	0.85[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs589574	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs592656	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs593130	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs601480	0.85[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs604545	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs609235	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs619323	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs622367	0.85[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs638777	0.85[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs639003	0.85[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs640988	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs641574	0.95[ASN][1000 genomes]
rs645905	0.85[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs654035	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs656292	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6591144	0.83[ASN][1000 genomes]
rs659840	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs660278	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs665554	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs669397	0.85[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs669793	0.85[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs675001	0.85[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs675084	0.83[AFR][1000 genomes];0.86[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs677315	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs684470	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs694514	0.86[ASN][1000 genomes]
rs7116046	0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs948297	0.80[AMR][1000 genomes];0.85[ASN][1000 genomes]

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:105827400-105850200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr11:105831600-105838600	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr11:105837200-105838600	Weak transcription	Brain Substantia Nigra	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links