Variant report

Variant	rs1271110
Chromosome Location	chr11:105835540-105835541
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs1147065	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1262357	0.81[AFR][1000 genomes];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1267444	0.81[AFR][1000 genomes];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2155338	0.84[AMR][1000 genomes]
rs2435294	0.80[AMR][1000 genomes]
rs3758790	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs471396	0.81[AFR][1000 genomes];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs471795	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs505829	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs507450	0.81[AFR][1000 genomes];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs511106	0.81[AFR][1000 genomes];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs513947	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs534844	0.81[AFR][1000 genomes];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs556968	0.81[AFR][1000 genomes];0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs561643	0.81[AFR][1000 genomes];0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs562546	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs589574	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs592656	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs593130	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs604545	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs609235	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs619323	0.81[AFR][1000 genomes];0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs640988	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs654035	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs656292	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs659840	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs660278	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs665554	0.81[AFR][1000 genomes];0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs677315	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs684470	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:105827400-105850200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr11:105831600-105836400	Weak transcription	HUES48 Cell Line	embryonic stem cell
3	chr11:105831600-105838600	Weak transcription	Cortex derived primary cultured neurospheres	brain
4	chr11:105831800-105836200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chr11:105831800-105836400	Weak transcription	HUES64 Cell Line	embryonic stem cell
6	chr11:105832000-105836400	Weak transcription	HUES6 Cell Line	embryonic stem cell

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