Variant report

Variant	rs11227441
Chromosome Location	chr11:66037585-66037586
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:1)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:1 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr11:66037495-66037668	GM12878	blood:	n/a	n/a

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:65624882..65627968-chr11:66034504..66038316,6	K562	blood:
2	chr11:66036063..66037921-chr11:66134364..66136433,2	K562	blood:
3	chr11:66034858..66038328-chr11:66053749..66060447,9	MCF-7	breast:
4	chr11:65728121..65730647-chr11:66035766..66038196,2	MCF-7	breast:
5	chr11:65657107..65659864-chr11:66036057..66038289,3	MCF-7	breast:
6	chr11:65655875..65658695-chr11:66035091..66037770,2	MCF-7	breast:
7	chr11:66036265..66039186-chr11:66074799..66077052,2	MCF-7	breast:
8	chr11:65624298..65626384-chr11:66036037..66037653,2	MCF-7	breast:
9	chr11:66035212..66038142-chr11:66136666..66139462,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000254855	TF binding region
ENSG00000254762	TF binding region
ENSG00000172732	Chromatin interaction
ENSG00000172500	Chromatin interaction
ENSG00000179292	Chromatin interaction
ENSG00000175602	Chromatin interaction
ENSG00000175467	Chromatin interaction
ENSG00000174669	Chromatin interaction
ENSG00000174851	Chromatin interaction
ENSG00000172757	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs11825510	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73501972	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3335923	chr11:65741698-66175759	Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	117 gene(s)	inside rSNPs	diseases
2	esv3407551	chr11:65794503-66158322	Weak transcription Genic enhancers Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	103 gene(s)	inside rSNPs	diseases
3	esv3392427	chr11:65981489-66273695	Enhancers Active TSS Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	118 gene(s)	inside rSNPs	diseases
4	nsv897771	chr11:66011280-66362997	Active TSS Flanking Active TSS Weak transcription Enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	124 gene(s)	inside rSNPs	diseases
5	nsv897772	chr11:66018155-66254085	Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription Active TSS Weak transcription Genic enhancers Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	118 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:66036000-66038000	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr11:66036400-66037600	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
3	chr11:66036400-66037600	Flanking Active TSS	Primary hematopoietic stem cells	blood
4	chr11:66036400-66037600	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
5	chr11:66036400-66037600	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr11:66036400-66037600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr11:66036600-66037600	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
8	chr11:66036600-66037600	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr11:66036600-66037600	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
10	chr11:66036600-66037600	Flanking Active TSS	Stomach Smooth Muscle	stomach
11	chr11:66036600-66037800	Flanking Active TSS	Duodenum Mucosa	Duodenum
12	chr11:66036600-66037800	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
13	chr11:66036800-66037600	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
14	chr11:66036800-66037600	Flanking Active TSS	Primary T cells from cord blood	blood
15	chr11:66036800-66037600	Flanking Active TSS	Primary T helper memory cells from peripheral blood 2	blood
16	chr11:66036800-66037600	Flanking Active TSS	Primary T killer memory cells from peripheral blood	blood
17	chr11:66036800-66037600	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr11:66036800-66037600	Flanking Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
19	chr11:66036800-66037600	Flanking Active TSS	Rectal Smooth Muscle	rectum
20	chr11:66036800-66037600	Flanking Active TSS	Dnd41	blood
21	chr11:66036800-66037600	Flanking Active TSS	Hela-S3	cervix
22	chr11:66036800-66037600	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
23	chr11:66036800-66037800	Flanking Active TSS	GM12878-XiMat	blood
24	chr11:66037000-66037600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
25	chr11:66037000-66037600	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
26	chr11:66037000-66037600	Flanking Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
27	chr11:66037000-66037600	Flanking Active TSS	Fetal Intestine Large	intestine
28	chr11:66037000-66037600	Enhancers	Spleen	Spleen
29	chr11:66037000-66037600	Flanking Active TSS	HepG2	liver
30	chr11:66037000-66037800	Enhancers	Placenta Amnion	Placenta Amnion
31	chr11:66037000-66037800	Flanking Active TSS	Thymus	Thymus
32	chr11:66037000-66039400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
33	chr11:66037000-66039800	Weak transcription	Small Intestine	intestine
34	chr11:66037200-66037600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
35	chr11:66037200-66037600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
36	chr11:66037200-66037600	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
37	chr11:66037200-66037600	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
38	chr11:66037200-66037600	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
39	chr11:66037200-66037600	Flanking Active TSS	Duodenum Smooth Muscle	Duodenum
40	chr11:66037200-66037600	Enhancers	Fetal Muscle Trunk	muscle
41	chr11:66037200-66037600	Transcr. at gene 5' and 3'	Fetal Thymus	thymus
42	chr11:66037200-66037600	Enhancers	Lung	lung
43	chr11:66037200-66037600	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
44	chr11:66037200-66037600	Enhancers	Rectal Mucosa Donor 31	rectum
45	chr11:66037200-66037600	Enhancers	Sigmoid Colon	Sigmoid Colon
46	chr11:66037200-66037600	Transcr. at gene 5' and 3'	K562	blood
47	chr11:66037200-66037800	Enhancers	Primary monocytes fromperipheralblood	blood
48	chr11:66037200-66037800	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
49	chr11:66037200-66037800	Enhancers	Cortex derived primary cultured neurospheres	brain
50	chr11:66037200-66037800	Enhancers	Brain Cingulate Gyrus	brain

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