Variant report

Variant	rs11825510
Chromosome Location	chr11:66026191-66026192
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:101)
CpG islands
(count:61)
Chromatin interactive
region (count:15)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:101 , 50 per page) page: 1 2 3

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	HCFC1	chr11:66024101-66026347	Hela-S3	cervix:	n/a	n/a
2	CTCF	chr11:66026147-66026216	K562	blood:	n/a	n/a
3	BACH1	chr11:66025302-66026230	H1-hESC	embryonic stem cell:	n/a	n/a
4	YY1	chr11:66025702-66026219	ECC-1	luminal epithelium:	n/a	n/a
5	POLR2A	chr11:66024325-66026259	PANC-1	pancreas:	n/a	n/a
6	MAZ	chr11:66024259-66026280	IMR90	lung:	n/a	chr11:66025083-66025093 chr11:66025257-66025267
7	JUN	chr11:66025105-66026294	K562	blood:	n/a	n/a
8	POLR2A	chr11:66024003-66026243	PANC-1	pancreas:	n/a	n/a
9	MXI1	chr11:66024050-66026498	SK-N-SH	brain:	n/a	chr11:66024263-66024272
10	PML	chr11:66024365-66026262	MCF-7	breast:	n/a	n/a
11	RAD21	chr11:66025592-66026191	ECC-1	luminal epithelium:	n/a	n/a
12	CTCF	chr11:66026140-66026290	HCPEpiC	choroid plexus:	n/a	n/a
13	STAT5A	chr11:66024354-66026295	GM12878	blood:	n/a	n/a
14	CTCF	chr11:66026080-66026230	HEEpiC	esophagus:	n/a	n/a
15	ZNF263	chr11:66025587-66026199	HEK293-T-REx	kidney:	n/a	n/a
16	CTCF	chr11:66026180-66026330	GM06990	blood:	n/a	n/a
17	HMGN3	chr11:66024538-66026275	K562	blood:	n/a	n/a
18	POLR2A	chr11:66024332-66026338	MCF-7	breast:	n/a	n/a
19	POLR2A	chr11:66025740-66026211	A549	lung:	n/a	n/a
20	FOXA1	chr11:66025757-66026223	HepG2	liver:	n/a	n/a
21	FOXA1	chr11:66025735-66026240	T-47D	breast:	n/a	n/a
22	CTCF	chr11:66026120-66026270	HL-60	blood:	n/a	n/a
23	POLR2A	chr11:66023881-66026286	GM12892	blood:	n/a	n/a
24	POLR2A	chr11:66024251-66026529	H1-hESC	embryonic stem cell:	n/a	n/a
25	FOXA2	chr11:66025618-66026275	A549	lung:	n/a	n/a
26	TCF12	chr11:66024304-66026266	A549	lung:	n/a	chr11:66025230-66025240
27	POLR2A	chr11:66026176-66026351	H1-hESC	embryonic stem cell:	n/a	n/a
28	CTCF	chr11:66026157-66026246	Spleen_OC	spleen:	n/a	n/a
29	POLR2A	chr11:66024500-66026204	ECC-1	luminal epithelium:	n/a	n/a
30	EGR1	chr11:66024483-66026332	MCF-7	breast:	n/a	chr11:66025224-66025237 chr11:66025081-66025092 chr11:66025079-66025094 chr11:66025256-66025266 chr11:66025080-66025093 chr11:66025077-66025091 chr11:66025080-66025093 chr11:66025385-66025398 chr11:66025134-66025144 chr11:66025081-66025090 chr11:66025080-66025093 chr11:66025251-66025264 chr11:66025079-66025093 chr11:66025381-66025403 chr11:66025080-66025093
31	RAD21	chr11:66025556-66026197	A549	lung:	n/a	n/a
32	SMC3	chr11:66024333-66026925	SK-N-SH	brain:	n/a	n/a
33	MAX	chr11:66024282-66026299	HepG2	liver:	n/a	chr11:66025083-66025093 chr11:66025257-66025267
34	CTCF	chr11:66026140-66026290	GM12878	blood:	n/a	n/a
35	ELF1	chr11:66024226-66026405	MCF-7	breast:	n/a	n/a
36	MXI1	chr11:66024228-66027156	IMR90	lung:	n/a	chr11:66024263-66024272
37	FOXM1	chr11:66024674-66026245	GM12878	blood:	n/a	n/a
38	CCNT2	chr11:66024562-66026276	K562	blood:	n/a	chr11:66025415-66025424
39	POLR2A	chr11:66023761-66026479	GM12878	blood:	n/a	n/a
40	CTCF	chr11:66026166-66026221	GM19238	blood:	n/a	n/a
41	POLR2A	chr11:66024259-66026349	H1-neurons	neurons:	n/a	n/a
42	SIN3AK20	chr11:66024589-66026208	A549	lung:	n/a	n/a
43	POLR2A	chr11:66024058-66027180	GM12878	blood:	n/a	n/a
44	SIN3AK20	chr11:66024247-66026762	MCF-7	breast:	n/a	n/a
45	RAD21	chr11:66025563-66026282	MCF-7	breast:	n/a	n/a
46	MAX	chr11:66024967-66026359	H1-hESC	embryonic stem cell:	n/a	chr11:66025083-66025093 chr11:66025257-66025267
47	FOXP2	chr11:66025695-66026314	PFSK-1	brain:	n/a	n/a
48	MAX	chr11:66025732-66026238	HepG2	liver:	n/a	n/a
49	GABPA	chr11:66025700-66026296	H1-hESC	embryonic stem cell:	n/a	n/a
50	POLR2A	chr11:66023685-66026223	GM12892	blood:	n/a	n/a

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr11:66026159-66026209	AG04450	lung:	fetal
2	chr11:66026159-66026209	HCT-116	colon:	n/a
3	chr11:66026159-66026209	ECC-1	luminal epithelium:	n/a
4	chr11:66026159-66026209	HRCEpiC	kidney:	n/a
5	chr11:66026159-66026209	HRE	kidney:	n/a
6	chr11:66026159-66026209	AG09309	skin:	n/a
7	chr11:66026159-66026209	HNPCEpiC	eye:	n/a
8	chr11:66026159-66026209	BJ	skin:	n/a
9	chr11:66026159-66026209	MCF-7	breast:	n/a
10	chr11:66026159-66026209	AG10803	skin:	n/a
11	chr11:66026159-66026209	A549	lung:	n/a
12	chr11:66026159-66026209	ProgFib	skin:	n/a
13	chr11:66026159-66026209	HepG2	liver:	n/a
14	chr11:66026159-66026209	Jurkat	blood:	n/a
15	chr11:66026159-66026209	PANC-1	pancreas:	n/a
16	chr11:66026159-66026209	SK-N-SH_RA	brain:	n/a
17	chr11:66026159-66026209	Hela-S3	cervix:	n/a
18	chr11:66026159-66026209	NT2-D1	testis:	n/a
19	chr11:66026159-66026209	HCF	heart:	n/a
20	chr11:66026159-66026209	HPAEpiC	pulmonary alveolar:	n/a
21	chr11:66026159-66026209	AG04449	skin:	fetal
22	chr11:66026159-66026209	SAEC	small airway:	n/a
23	chr11:66026159-66026209	H1-hESC	embryonic stem cell:	embryo
24	chr11:66026159-66026209	AoSMC	blood vessel:	n/a
25	chr11:66026159-66026209	PFSK-1	brain:	n/a
26	chr11:66026159-66026209	GM12892	blood:	n/a
27	chr11:66026159-66026209	NHDF-neo	bronchial:	n/a
28	chr11:66026159-66026209	HIPEpiC	eye:	n/a
29	chr11:66026159-66026209	Caco-2	colon:	n/a
30	chr11:66026159-66026209	SK-N-SH	brain:	n/a
31	chr11:66026159-66026209	HUVEC	blood vessel:	n/a
32	chr11:66026159-66026209	HCPEpiC	choroid plexus:	n/a
33	chr11:66026159-66026209	BE2_C	brain:	n/a
34	chr11:66026159-66026209	Hepatocyte	liver:	n/a
35	chr11:66026159-66026209	CMK	blood:	n/a
36	chr11:66026159-66026209	IMR90	lung:	fetal
37	chr11:66026159-66026209	NH-A	brain:	n/a
38	chr11:66026159-66026209	GM06990	blood:	n/a
39	chr11:66026159-66026209	GM12891	blood:	n/a
40	chr11:66026159-66026209	NB4	blood:	n/a
41	chr11:66026159-66026209	SKMC	muscle:	n/a
42	chr11:66026159-66026209	LNCaP	prostate:	n/a
43	chr11:66026159-66026209	NHBE	bronchial:	n/a
44	chr11:66026159-66026209	HL-60	blood:	n/a
45	chr11:66026159-66026209	GM19239	blood:	n/a
46	chr11:66026159-66026209	U87	brain:	n/a
47	chr11:66026159-66026209	PrEC	prostate:	n/a
48	chr11:66026159-66026209	SK-N-MC	brain:	n/a
49	chr11:66026159-66026209	ovcar-3	ovarian:	n/a
50	chr11:66026159-66026209	HCM	heart:	n/a

(count:15 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:66000981..66003295-chr11:66025694..66027840,2	MCF-7	breast:
2	chr11:66024302..66026285-chr11:66204884..66207814,2	K562	blood:
3	chr11:65837353..65839732-chr11:66024702..66027312,4	MCF-7	breast:
4	chr11:66024034..66026694-chr11:66139002..66141879,3	K562	blood:
5	chr11:65989212..65991575-chr11:66026106..66027836,2	K562	blood:
6	chr11:66025864..66027446-chr11:66054760..66056847,2	MCF-7	breast:
7	chr11:66023062..66027568-chr11:66043406..66047432,6	MCF-7	breast:
8	chr11:65836209..65839676-chr11:66023244..66028603,5	K562	blood:
9	chr11:66025383..66026303-chr11:66034980..66036455,5	K562	blood:
10	chr11:66024193..66026302-chr11:66078513..66080542,2	K562	blood:
11	chr11:66001048..66005281-chr11:66024022..66027550,4	K562	blood:
12	chr11:65812285..65813209-chr11:66025403..66026314,2	MCF-7	breast:
13	chr11:65998063..65999977-chr11:66024495..66026348,2	MCF-7	breast:
14	chr11:65849463..65852379-chr11:66024191..66026545,2	K562	blood:
15	chr11:65836209..65839625-chr11:66023244..66027607,5	K562	blood:

No data

Variant related genes	Relation type
KLC2	TF binding region
KLC2	CpG island
ENSG00000245156	Chromatin interaction
ENSG00000174547	Chromatin interaction
ENSG00000254452	Chromatin interaction
ENSG00000254762	Chromatin interaction
ENSG00000175115	Chromatin interaction
ENSG00000175229	Chromatin interaction
ENSG00000174851	Chromatin interaction
ENSG00000174871	Chromatin interaction
ENSG00000255038	Chromatin interaction
ENSG00000174669	Chromatin interaction
ENSG00000174903	Chromatin interaction
ENSG00000254458	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs11227441	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11544832	1.00[CHB][hapmap];1.00[CHD][hapmap]
rs11823756	1.00[CHD][hapmap]
rs555826	1.00[CHD][hapmap]
rs7110351	1.00[CHD][hapmap]
rs73501972	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3335923	chr11:65741698-66175759	Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	117 gene(s)	inside rSNPs	diseases
2	esv3407551	chr11:65794503-66158322	Weak transcription Genic enhancers Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	103 gene(s)	inside rSNPs	diseases
3	esv3392427	chr11:65981489-66273695	Enhancers Active TSS Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	118 gene(s)	inside rSNPs	diseases
4	nsv897771	chr11:66011280-66362997	Active TSS Flanking Active TSS Weak transcription Enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	124 gene(s)	inside rSNPs	diseases
5	nsv897772	chr11:66018155-66254085	Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription Active TSS Weak transcription Genic enhancers Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	118 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:66024000-66026600	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr11:66024200-66026200	Active TSS	ES-I3 Cell Line	embryonic stem cell
3	chr11:66024200-66026200	Active TSS	HUES48 Cell Line	embryonic stem cell
4	chr11:66024200-66026200	Active TSS	iPS-15b Cell Line	embryonic stem cell
5	chr11:66024200-66026200	Active TSS	A549	lung
6	chr11:66024200-66026400	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr11:66024200-66026400	Active TSS	Pancreatic Islets	Pancreatic Islet
8	chr11:66024200-66026600	Active TSS	HUES64 Cell Line	embryonic stem cell
9	chr11:66024400-66026200	Active TSS	ES-WA7 Cell Line	embryonic stem cell
10	chr11:66024400-66026200	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr11:66024400-66026200	Active TSS	iPS-20b Cell Line	embryonic stem cell
12	chr11:66024400-66026200	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr11:66024400-66026200	Active TSS	Fetal Kidney	kidney
14	chr11:66024400-66026200	Active TSS	HSMM	muscle
15	chr11:66024400-66026400	Active TSS	H9 Cell Line	embryonic stem cell
16	chr11:66024600-66026200	Active TSS	Primary T killer memory cells from peripheral blood	blood
17	chr11:66024600-66026200	Active TSS	Colon Smooth Muscle	Colon
18	chr11:66024600-66026200	Active TSS	Ovary	ovary
19	chr11:66024600-66026200	Active TSS	Small Intestine	intestine
20	chr11:66024600-66026200	Active TSS	HepG2	liver
21	chr11:66024600-66026400	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
22	chr11:66024600-66026400	Active TSS	iPS-18 Cell Line	embryonic stem cell
23	chr11:66024600-66026400	Flanking Bivalent TSS/Enh	Monocytes-CD14+_RO01746	blood
24	chr11:66024600-66026600	Active TSS	HUES6 Cell Line	embryonic stem cell
25	chr11:66024800-66026200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
26	chr11:66024800-66026400	Transcr. at gene 5' and 3'	Primary T helper 17 cells PMA-I stimulated	--
27	chr11:66025000-66026200	Active TSS	Breast Myoepithelial Primary Cells	Breast
28	chr11:66025000-66026200	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
29	chr11:66025000-66026200	Active TSS	Duodenum Smooth Muscle	Duodenum
30	chr11:66025000-66026200	Active TSS	Placenta Amnion	Placenta Amnion
31	chr11:66025000-66026200	Active TSS	K562	blood
32	chr11:66025000-66026200	Active TSS	Osteobl	bone
33	chr11:66025000-66028000	Enhancers	Fetal Brain Male	brain
34	chr11:66025200-66027000	Transcr. at gene 5' and 3'	Foreskin Fibroblast Primary Cells skin02	Skin
35	chr11:66025400-66026200	Flanking Active TSS	Primary hematopoietic stem cells	blood
36	chr11:66025400-66026400	Flanking Active TSS	Primary B cells from cord blood	blood
37	chr11:66025400-66026400	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
38	chr11:66025400-66026400	Flanking Active TSS	Adipose Nuclei	Adipose
39	chr11:66025400-66026400	Flanking Active TSS	Colonic Mucosa	Colon
40	chr11:66025600-66026200	Flanking Active TSS	Primary mononuclear cells fromperipheralblood	Blood
41	chr11:66025600-66026400	Flanking Active TSS	Primary T cells fromperipheralblood	blood
42	chr11:66025600-66026400	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
43	chr11:66025600-66026400	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
44	chr11:66025600-66026400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
45	chr11:66025600-66026400	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
46	chr11:66025600-66026400	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
47	chr11:66025600-66026400	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
48	chr11:66025600-66026800	Flanking Active TSS	Stomach Smooth Muscle	stomach
49	chr11:66025800-66026200	Flanking Active TSS	Primary B cells from peripheral blood	blood
50	chr11:66025800-66026400	Transcr. at gene 5' and 3'	iPS DF 19.11 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links