Variant report

Variant	rs11228225
Chromosome Location	chr11:68161977-68161978
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:68038889..68041726-chr11:68160225..68162377,2	K562	blood:
2	chr11:68161295..68163947-chr11:68166946..68168882,2	MCF-7	breast:
3	chr11:68155804..68157733-chr11:68161892..68163614,2	MCF-7	breast:
4	chr11:68159157..68163122-chr11:68164124..68167262,3	K562	blood:
5	chr11:67977708..67980112-chr11:68160025..68163658,3	K562	blood:

Variant related genes	Relation type
ENSG00000171067	Chromatin interaction

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10896321	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11602256	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11823032	0.92[ASN][1000 genomes]
rs12222261	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs160607	0.81[AMR][1000 genomes]
rs178352	0.82[AMR][1000 genomes]
rs1784237	0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3781590	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs57197891	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs587808	0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs628115	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs629012	0.84[EUR][1000 genomes]
rs643892	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs659605	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs66787665	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs671191	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:14 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv825963	chr11:67763676-68197054	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	149 gene(s)	inside rSNPs	diseases
2	esv3347272	chr11:67969427-68218997	Strong transcription Flanking Active TSS Genic enhancers Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	78 gene(s)	inside rSNPs	diseases
3	nsv897857	chr11:68056770-68231240	Enhancers Genic enhancers Active TSS Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
4	nsv897858	chr11:68077238-68293545	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
5	nsv897859	chr11:68102000-68231240	Weak transcription Strong transcription Enhancers Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
6	nsv897860	chr11:68102000-68293545	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
7	nsv1047532	chr11:68103330-68239242	Weak transcription Strong transcription Active TSS Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
8	nsv541082	chr11:68103330-68239242	Weak transcription Enhancers Strong transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
9	nsv1039671	chr11:68120571-68206630	Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
10	nsv1036561	chr11:68123135-68315685	Weak transcription Strong transcription Genic enhancers Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
11	nsv897861	chr11:68129606-68196830	Enhancers Genic enhancers Strong transcription Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
12	nsv897862	chr11:68129606-68236389	Strong transcription Genic enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
13	nsv469965	chr11:68140781-68217420	Weak transcription Strong transcription Enhancers Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
14	nsv555285	chr11:68144283-68231240	Strong transcription Weak transcription Active TSS Flanking Active TSS Genic enhancers Enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:102 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:68142600-68179000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr11:68147400-68181600	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr11:68148600-68165600	Weak transcription	Small Intestine	intestine
4	chr11:68148600-68196800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr11:68149000-68165200	Weak transcription	Psoas Muscle	Psoas
6	chr11:68149200-68174000	Weak transcription	Primary B cells from cord blood	blood
7	chr11:68149400-68167000	Weak transcription	Brain Anterior Caudate	brain
8	chr11:68149600-68180400	Weak transcription	NHLF	lung
9	chr11:68150200-68164600	Weak transcription	Right Atrium	heart
10	chr11:68150200-68166800	Weak transcription	Brain Substantia Nigra	brain
11	chr11:68151800-68165000	Weak transcription	Brain Hippocampus Middle	brain
12	chr11:68151800-68166800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
13	chr11:68152000-68165000	Strong transcription	HepG2	liver
14	chr11:68152200-68166000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
15	chr11:68152400-68163400	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
16	chr11:68152400-68164600	Strong transcription	Stomach Smooth Muscle	stomach
17	chr11:68152400-68164800	Strong transcription	Duodenum Mucosa	Duodenum
18	chr11:68152400-68165800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
19	chr11:68153200-68162000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
20	chr11:68153200-68165200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
21	chr11:68153400-68163400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
22	chr11:68153400-68164000	Strong transcription	Rectal Mucosa Donor 31	rectum
23	chr11:68153800-68162000	Strong transcription	Lung	lung
24	chr11:68154200-68165200	Weak transcription	Placenta	Placenta
25	chr11:68154200-68165400	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
26	chr11:68154400-68163800	Strong transcription	Fetal Stomach	stomach
27	chr11:68154400-68165600	Strong transcription	Fetal Intestine Large	intestine
28	chr11:68155400-68165600	Weak transcription	Stomach Mucosa	stomach
29	chr11:68155800-68162200	Strong transcription	Fetal Muscle Leg	muscle
30	chr11:68156400-68162200	Strong transcription	Fetal Muscle Trunk	muscle
31	chr11:68156400-68165200	Strong transcription	Fetal Intestine Small	intestine
32	chr11:68156400-68166800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
33	chr11:68157000-68171000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
34	chr11:68157200-68163400	Weak transcription	Fetal Heart	heart
35	chr11:68157200-68165200	Weak transcription	Fetal Brain Male	brain
36	chr11:68157200-68166800	Weak transcription	Fetal Kidney	kidney
37	chr11:68157200-68174000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
38	chr11:68157200-68196600	Weak transcription	NH-A	brain
39	chr11:68157400-68165600	Weak transcription	Esophagus	oesophagus
40	chr11:68157400-68170800	Weak transcription	HMEC	breast
41	chr11:68157600-68163200	Weak transcription	HSMMtube	muscle
42	chr11:68157600-68165800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
43	chr11:68157600-68167000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
44	chr11:68157600-68167000	Weak transcription	Duodenum Smooth Muscle	Duodenum
45	chr11:68157600-68171000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
46	chr11:68157600-68180400	Weak transcription	Osteobl	bone
47	chr11:68157800-68163400	Weak transcription	HSMM	muscle
48	chr11:68157800-68164800	Strong transcription	Liver	Liver
49	chr11:68157800-68166600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
50	chr11:68157800-68169600	Weak transcription	H9 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links