Variant report

Variant	rs11823032
Chromosome Location	chr11:68145166-68145167
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:68108161..68113775-chr11:68145002..68152027,11	MCF-7	breast:
2	chr11:68078491..68080694-chr11:68144064..68145682,2	MCF-7	breast:
3	chr11:68138033..68141463-chr11:68144813..68147570,3	K562	blood:
4	chr11:68139963..68143700-chr11:68143791..68147570,5	K562	blood:
5	chr11:68142032..68143700-chr11:68144005..68145660,2	K562	blood:

Variant related genes	Relation type
ENSG00000162337	Chromatin interaction

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10896321	0.90[AFR][1000 genomes];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11228221	0.81[ASN][1000 genomes]
rs11228225	0.92[ASN][1000 genomes]
rs11602256	0.95[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11826287	1.00[CHB][hapmap];0.81[ASN][1000 genomes]
rs12222261	0.84[ASN][1000 genomes]
rs160607	0.85[JPT][hapmap]
rs1784237	0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2508838	0.82[EUR][1000 genomes]
rs312783	0.85[JPT][hapmap]
rs312788	0.85[JPT][hapmap]
rs312792	0.85[JPT][hapmap]
rs314775	0.85[JPT][hapmap]
rs3781590	0.95[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs55993257	0.81[ASN][1000 genomes]
rs57197891	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs587808	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs628115	0.85[ASN][1000 genomes]
rs643892	0.95[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs659605	0.95[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs66787665	0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs671191	0.95[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs74744	0.85[JPT][hapmap]
rs8181502	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:14 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv825963	chr11:67763676-68197054	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	149 gene(s)	inside rSNPs	diseases
2	esv3347272	chr11:67969427-68218997	Strong transcription Flanking Active TSS Genic enhancers Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	78 gene(s)	inside rSNPs	diseases
3	nsv897857	chr11:68056770-68231240	Enhancers Genic enhancers Active TSS Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
4	nsv897858	chr11:68077238-68293545	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
5	nsv897859	chr11:68102000-68231240	Weak transcription Strong transcription Enhancers Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
6	nsv897860	chr11:68102000-68293545	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
7	nsv1047532	chr11:68103330-68239242	Weak transcription Strong transcription Active TSS Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
8	nsv541082	chr11:68103330-68239242	Weak transcription Enhancers Strong transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
9	nsv1039671	chr11:68120571-68206630	Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
10	nsv1036561	chr11:68123135-68315685	Weak transcription Strong transcription Genic enhancers Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
11	nsv897861	chr11:68129606-68196830	Enhancers Genic enhancers Strong transcription Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
12	nsv897862	chr11:68129606-68236389	Strong transcription Genic enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
13	nsv469965	chr11:68140781-68217420	Weak transcription Strong transcription Enhancers Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
14	nsv555285	chr11:68144283-68231240	Strong transcription Weak transcription Active TSS Flanking Active TSS Genic enhancers Enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:103 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:68121600-68148200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr11:68121800-68156400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
3	chr11:68124800-68146600	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chr11:68128200-68153800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
5	chr11:68129800-68153600	Weak transcription	HUES64 Cell Line	embryonic stem cell
6	chr11:68135200-68147600	Weak transcription	Primary T cells from cord blood	blood
7	chr11:68135200-68153400	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr11:68135200-68153600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
9	chr11:68136200-68153400	Weak transcription	HUES48 Cell Line	embryonic stem cell
10	chr11:68136600-68145600	Enhancers	Left Ventricle	heart
11	chr11:68136800-68152800	Weak transcription	Dnd41	blood
12	chr11:68137000-68156400	Weak transcription	K562	blood
13	chr11:68139200-68145800	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr11:68139600-68156400	Weak transcription	Hela-S3	cervix
15	chr11:68140000-68147600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
16	chr11:68140000-68147800	Weak transcription	HUES6 Cell Line	embryonic stem cell
17	chr11:68140000-68150200	Enhancers	Lung	lung
18	chr11:68140000-68153400	Weak transcription	H1 Cell Line	embryonic stem cell
19	chr11:68140200-68153600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
20	chr11:68141200-68148200	Weak transcription	Aorta	Aorta
21	chr11:68141400-68153400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr11:68141800-68145400	Genic enhancers	Fetal Stomach	stomach
23	chr11:68142000-68147600	Weak transcription	Fetal Thymus	thymus
24	chr11:68142200-68146600	Weak transcription	Fetal Kidney	kidney
25	chr11:68142200-68146800	Weak transcription	GM12878-XiMat	blood
26	chr11:68142400-68146000	Genic enhancers	Fetal Muscle Leg	muscle
27	chr11:68142400-68146200	Strong transcription	Fetal Intestine Large	intestine
28	chr11:68142400-68146600	Weak transcription	NH-A	brain
29	chr11:68142400-68147600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
30	chr11:68142400-68147800	Weak transcription	Placenta Amnion	Placenta Amnion
31	chr11:68142600-68145800	Genic enhancers	Fetal Muscle Trunk	muscle
32	chr11:68142600-68146600	Weak transcription	Muscle Satellite Cultured Cells	--
33	chr11:68142600-68146600	Weak transcription	NHLF	lung
34	chr11:68142600-68146800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
35	chr11:68142600-68146800	Weak transcription	Brain Inferior Temporal Lobe	brain
36	chr11:68142600-68146800	Weak transcription	Osteobl	bone
37	chr11:68142600-68147600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
38	chr11:68142600-68148000	Weak transcription	Fetal Brain Female	brain
39	chr11:68142600-68148200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
40	chr11:68142600-68179000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
41	chr11:68142800-68145200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
42	chr11:68142800-68145800	Genic enhancers	Stomach Smooth Muscle	stomach
43	chr11:68142800-68146600	Weak transcription	Rectal Smooth Muscle	rectum
44	chr11:68142800-68146800	Weak transcription	Primary B cells from cord blood	blood
45	chr11:68142800-68146800	Weak transcription	Duodenum Smooth Muscle	Duodenum
46	chr11:68142800-68147200	Weak transcription	HSMM	muscle
47	chr11:68142800-68147400	Weak transcription	Brain Angular Gyrus	brain
48	chr11:68142800-68147600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
49	chr11:68142800-68147600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
50	chr11:68142800-68147600	Weak transcription	Brain Substantia Nigra	brain

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