Variant report

Variant	rs11228900
Chromosome Location	chr11:56853658-56853659
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10160364	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10466677	1.00[EUR][1000 genomes]
rs10896552	0.90[EUR][1000 genomes]
rs10896561	0.87[CEU][hapmap]
rs10896563	1.00[YRI][hapmap]
rs10896565	0.85[CEU][hapmap]
rs10896566	1.00[EUR][1000 genomes]
rs11228830	0.90[EUR][1000 genomes]
rs11228881	0.85[CEU][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs11228907	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11228914	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12363251	0.81[ASN][1000 genomes]
rs12365853	1.00[EUR][1000 genomes]
rs713550	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs727575	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832162	chr11:56716658-56901528	Bivalent Enhancer Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases
2	nsv915640	chr11:56814841-57139786	Weak transcription Transcr. at gene 5' and 3' Enhancers Genic enhancers Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:56850000-56855400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr11:56850400-56855000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr11:56850600-56855200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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