Variant report

Variant	rs713550
Chromosome Location	chr11:56894225-56894226
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs1011568	0.84[EUR][1000 genomes]
rs10160364	0.92[EUR][1000 genomes]
rs10466677	0.92[EUR][1000 genomes]
rs10896561	1.00[CEU][hapmap]
rs10896565	1.00[CEU][hapmap];1.00[TSI][hapmap]
rs10896566	0.92[EUR][1000 genomes]
rs10896571	0.82[EUR][1000 genomes]
rs10896572	0.82[EUR][1000 genomes]
rs11228881	1.00[CEU][hapmap];1.00[TSI][hapmap];0.92[EUR][1000 genomes]
rs11228900	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11228907	0.92[EUR][1000 genomes]
rs11228914	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11228919	0.84[EUR][1000 genomes]
rs12365853	0.92[EUR][1000 genomes]
rs727575	0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832162	chr11:56716658-56901528	Bivalent Enhancer Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases
2	nsv915640	chr11:56814841-57139786	Weak transcription Transcr. at gene 5' and 3' Enhancers Genic enhancers Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
3	nsv482317	chr11:56857026-57028631	Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs713550	PDGFD	trans	lymphoblastoid	seeQTL
rs713550	FAM46A	trans	lymphoblastoid	seeQTL

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:56888200-56894600	Enhancers	K562	blood
2	chr11:56894200-56894600	Weak transcription	Placenta	Placenta
3	chr11:56894200-56895000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr11:56894200-56895000	Enhancers	A549	lung
5	chr11:56894200-56895200	Enhancers	Hela-S3	cervix

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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