Variant report

Variant	rs11228928
Chromosome Location	chr11:56930469-56930470
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs11228987	1.00[YRI][hapmap]
rs11229005	0.85[YRI][hapmap]
rs12286248	0.90[AFR][1000 genomes]
rs12288876	0.90[AFR][1000 genomes]
rs12290010	0.90[AFR][1000 genomes]
rs7111087	0.85[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv915640	chr11:56814841-57139786	Weak transcription Transcr. at gene 5' and 3' Enhancers Genic enhancers Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
2	nsv482317	chr11:56857026-57028631	Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:56924400-56931800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr11:56925400-56931800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr11:56928000-56931000	Weak transcription	Aorta	Aorta
4	chr11:56928400-56931200	Weak transcription	Adipose Nuclei	Adipose
5	chr11:56928800-56932400	Enhancers	Fetal Brain Male	brain
6	chr11:56929200-56930800	Enhancers	NHEK	skin
7	chr11:56929400-56931400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr11:56929600-56931200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr11:56929600-56931200	Weak transcription	Esophagus	oesophagus
10	chr11:56929800-56933600	Weak transcription	Stomach Mucosa	stomach
11	chr11:56929800-56934200	Weak transcription	Liver	Liver
12	chr11:56930000-56931200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
13	chr11:56930000-56931200	Enhancers	HMEC	breast
14	chr11:56930000-56931800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr11:56930200-56931000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr11:56930200-56931400	Weak transcription	Left Ventricle	heart
17	chr11:56930200-56932200	Enhancers	Fetal Brain Female	brain
18	chr11:56930400-56930600	Enhancers	Right Atrium	heart

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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