Variant report

Variant	rs11229138
Chromosome Location	chr11:57574628-57574629
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:57568699..57575383-chr11:57575572..57580605,8	K562	blood:

Variant related genes	Relation type
ENSG00000198561	Chromatin interaction

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs11229127	1.00[YRI][hapmap]
rs11229129	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs11229157	0.89[AFR][1000 genomes]
rs11229168	1.00[AFR][1000 genomes]
rs12269967	1.00[YRI][hapmap];0.84[AFR][1000 genomes]
rs12272365	0.84[AFR][1000 genomes]
rs12277841	1.00[YRI][hapmap]
rs12278162	0.84[AFR][1000 genomes]
rs12283589	0.92[AFR][1000 genomes]
rs12284892	0.87[AFR][1000 genomes]
rs12285188	0.92[AFR][1000 genomes]
rs12287051	0.84[AFR][1000 genomes]
rs12289980	1.00[YRI][hapmap]
rs12291396	0.92[AFR][1000 genomes]
rs12292079	1.00[AFR][1000 genomes]
rs28693653	0.89[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044030	chr11:57073395-58035564	Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS Strong transcription Enhancers Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	136 gene(s)	inside rSNPs	diseases
2	nsv541047	chr11:57073395-58035564	Active TSS Enhancers Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	136 gene(s)	inside rSNPs	diseases
3	nsv530621	chr11:57139699-57703639	Enhancers Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Weak transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	109 gene(s)	inside rSNPs	diseases
4	nsv1040913	chr11:57315006-57696122	Active TSS Flanking Active TSS Weak transcription Enhancers Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	93 gene(s)	inside rSNPs	diseases
5	nsv832164	chr11:57407617-57578825	Enhancers Strong transcription Genic enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
6	nsv1054205	chr11:57544264-58358509	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:57556400-57587800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr11:57564400-57575600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr11:57568200-57585800	Strong transcription	Fetal Muscle Trunk	muscle
4	chr11:57568200-57586000	Strong transcription	Fetal Muscle Leg	muscle
5	chr11:57568200-57588200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr11:57568400-57586600	Strong transcription	Placenta	Placenta
7	chr11:57568600-57581000	Strong transcription	K562	blood
8	chr11:57568600-57585800	Strong transcription	Sigmoid Colon	Sigmoid Colon
9	chr11:57568600-57586000	Strong transcription	HUES64 Cell Line	embryonic stem cell
10	chr11:57568600-57586000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr11:57568600-57586400	Strong transcription	iPS-18 Cell Line	embryonic stem cell
12	chr11:57568600-57586600	Strong transcription	HUES48 Cell Line	embryonic stem cell
13	chr11:57568600-57587000	Strong transcription	iPS-20b Cell Line	embryonic stem cell
14	chr11:57568600-57587200	Strong transcription	HUES6 Cell Line	embryonic stem cell
15	chr11:57568600-57589000	Strong transcription	NHLF	lung
16	chr11:57568800-57575600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
17	chr11:57568800-57575600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
18	chr11:57568800-57585200	Strong transcription	Rectal Mucosa Donor 29	rectum
19	chr11:57568800-57585600	Strong transcription	Fetal Intestine Large	intestine
20	chr11:57568800-57589000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
21	chr11:57568800-57589000	Strong transcription	NH-A	brain
22	chr11:57569000-57575200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
23	chr11:57569000-57575400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
24	chr11:57569000-57579000	Strong transcription	Placenta Amnion	Placenta Amnion
25	chr11:57569000-57579200	Strong transcription	ES-I3 Cell Line	embryonic stem cell
26	chr11:57569000-57580600	Strong transcription	H9 Cell Line	embryonic stem cell
27	chr11:57569000-57583800	Strong transcription	NHDF-Ad	bronchial
28	chr11:57569000-57584800	Strong transcription	iPS-15b Cell Line	embryonic stem cell
29	chr11:57569000-57584800	Strong transcription	HMEC	breast
30	chr11:57569000-57585000	Strong transcription	HepG2	liver
31	chr11:57569000-57585800	Strong transcription	H1 Cell Line	embryonic stem cell
32	chr11:57569000-57586000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
33	chr11:57569000-57586400	Strong transcription	Brain Germinal Matrix	brain
34	chr11:57569000-57587000	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
35	chr11:57569000-57587000	Strong transcription	NHEK	skin
36	chr11:57569000-57587200	Strong transcription	Rectal Mucosa Donor 31	rectum
37	chr11:57569000-57587400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
38	chr11:57569000-57587800	Weak transcription	Primary neutrophils fromperipheralblood	blood
39	chr11:57569000-57588800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
40	chr11:57569000-57589200	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
41	chr11:57569200-57577000	Strong transcription	Primary hematopoietic stem cells	blood
42	chr11:57569200-57577000	Strong transcription	Fetal Lung	lung
43	chr11:57569200-57579200	Strong transcription	Brain Cingulate Gyrus	brain
44	chr11:57569200-57579200	Strong transcription	Fetal Thymus	thymus
45	chr11:57569200-57579600	Strong transcription	iPS DF 6.9 Cell Line	embryonic stem cell
46	chr11:57569200-57579800	Strong transcription	Brain Anterior Caudate	brain
47	chr11:57569200-57579800	Strong transcription	Small Intestine	intestine
48	chr11:57569200-57580400	Strong transcription	Brain Dorsolateral Prefrontal Cortex	brain
49	chr11:57569200-57580800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
50	chr11:57569200-57581200	Strong transcription	Hela-S3	cervix

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