Variant report

Variant	rs12283589
Chromosome Location	chr11:57710165-57710166
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs11229127	1.00[YRI][hapmap]
rs11229129	1.00[YRI][hapmap];0.92[AFR][1000 genomes]
rs11229138	1.00[YRI][hapmap];0.92[AFR][1000 genomes]
rs11229157	0.81[AFR][1000 genomes]
rs11229168	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12285188	0.85[AFR][1000 genomes]
rs12291396	0.85[AFR][1000 genomes]
rs12292079	0.92[AFR][1000 genomes]
rs1704775	1.00[AMR][1000 genomes]
rs1941721	1.00[AMR][1000 genomes]
rs2509806	1.00[AMR][1000 genomes]
rs28693653	0.81[AFR][1000 genomes]
rs2926660	1.00[AMR][1000 genomes]
rs2956984	1.00[AMR][1000 genomes]
rs2969945	1.00[AMR][1000 genomes]
rs600251	1.00[AMR][1000 genomes]
rs603420	1.00[AMR][1000 genomes]
rs610801	1.00[AMR][1000 genomes]
rs621683	1.00[AMR][1000 genomes]
rs621731	1.00[AMR][1000 genomes]
rs635536	1.00[AMR][1000 genomes]
rs653915	1.00[AMR][1000 genomes]
rs660400	1.00[AMR][1000 genomes]
rs686303	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044030	chr11:57073395-58035564	Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS Strong transcription Enhancers Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	136 gene(s)	inside rSNPs	diseases
2	nsv541047	chr11:57073395-58035564	Active TSS Enhancers Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	136 gene(s)	inside rSNPs	diseases
3	nsv1054205	chr11:57544264-58358509	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
4	nsv897589	chr11:57623815-58052357	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:57707400-57710600	Enhancers	NHEK	skin
2	chr11:57707600-57710600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr11:57707600-57710600	Enhancers	HepG2	liver
4	chr11:57709400-57710200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr11:57709400-57710600	Enhancers	Esophagus	oesophagus
6	chr11:57709600-57710400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr11:57709800-57713400	Weak transcription	Lung	lung

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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