Variant report

Variant	rs621731
Chromosome Location	chr11:57685473-57685474
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10792117	0.86[AFR][1000 genomes]
rs11229168	1.00[AMR][1000 genomes]
rs12283589	1.00[AMR][1000 genomes]
rs1397274	0.83[AFR][1000 genomes]
rs1451325	0.87[LWK][hapmap];1.00[MKK][hapmap]
rs1466057	1.00[YRI][hapmap];0.81[AFR][1000 genomes]
rs1553826	0.90[AFR][1000 genomes]
rs1588435	0.90[AFR][1000 genomes]
rs1704775	1.00[AMR][1000 genomes]
rs1941721	1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2441959	0.81[AFR][1000 genomes]
rs2509806	1.00[AMR][1000 genomes]
rs2926660	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2926663	0.85[AFR][1000 genomes]
rs2956983	0.85[AFR][1000 genomes]
rs2956984	1.00[AMR][1000 genomes]
rs2969941	0.80[AFR][1000 genomes]
rs2969942	0.80[AFR][1000 genomes]
rs2969945	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs3016261	0.85[AFR][1000 genomes]
rs3016262	0.85[AFR][1000 genomes]
rs3016263	0.80[AFR][1000 genomes]
rs3016293	0.85[AFR][1000 genomes]
rs3851122	0.81[AFR][1000 genomes]
rs600251	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs603420	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs610801	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs621683	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs635536	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs653915	1.00[AMR][1000 genomes]
rs6591449	1.00[YRI][hapmap];0.90[AFR][1000 genomes]
rs660400	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs667459	0.91[AFR][1000 genomes]
rs682785	1.00[AFR][1000 genomes]
rs686303	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7122654	0.81[AFR][1000 genomes]
rs7125096	0.90[AFR][1000 genomes]
rs7948282	0.90[AFR][1000 genomes]
rs938010	0.83[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044030	chr11:57073395-58035564	Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS Strong transcription Enhancers Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	136 gene(s)	inside rSNPs	diseases
2	nsv541047	chr11:57073395-58035564	Active TSS Enhancers Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	136 gene(s)	inside rSNPs	diseases
3	nsv530621	chr11:57139699-57703639	Enhancers Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Weak transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	109 gene(s)	inside rSNPs	diseases
4	nsv1040913	chr11:57315006-57696122	Active TSS Flanking Active TSS Weak transcription Enhancers Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	93 gene(s)	inside rSNPs	diseases
5	nsv1054205	chr11:57544264-58358509	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
6	nsv897589	chr11:57623815-58052357	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:57680000-57687800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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