Variant report

Variant	rs1553826
Chromosome Location	chr11:57743358-57743359
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs1588435	1.00[AFR][1000 genomes]
rs1941721	0.85[AFR][1000 genomes]
rs2441959	0.91[AFR][1000 genomes]
rs2926660	0.85[AFR][1000 genomes]
rs2969945	0.85[AFR][1000 genomes]
rs3851122	0.91[AFR][1000 genomes]
rs600251	0.85[AFR][1000 genomes]
rs603420	0.85[AFR][1000 genomes]
rs610801	0.85[AFR][1000 genomes]
rs621683	0.90[AFR][1000 genomes]
rs621731	0.90[AFR][1000 genomes]
rs635536	0.80[AFR][1000 genomes]
rs6591449	1.00[AFR][1000 genomes]
rs660400	0.85[AFR][1000 genomes]
rs667459	0.81[AFR][1000 genomes]
rs682785	0.90[AFR][1000 genomes]
rs7122654	0.91[AFR][1000 genomes]
rs7125096	1.00[AFR][1000 genomes]
rs7948282	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044030	chr11:57073395-58035564	Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS Strong transcription Enhancers Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	136 gene(s)	inside rSNPs	diseases
2	nsv541047	chr11:57073395-58035564	Active TSS Enhancers Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	136 gene(s)	inside rSNPs	diseases
3	nsv1054205	chr11:57544264-58358509	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
4	nsv897589	chr11:57623815-58052357	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
5	nsv517822	chr11:57728993-57751001	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:57738800-57745200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr11:57741600-57743400	Enhancers	HSMM	muscle
3	chr11:57741600-57743600	Enhancers	HSMMtube	muscle
4	chr11:57742400-57743400	Enhancers	Primary monocytes fromperipheralblood	blood
5	chr11:57742600-57745200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr11:57742600-57745200	Weak transcription	Esophagus	oesophagus
7	chr11:57742600-57751000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr11:57742600-57751000	Weak transcription	Brain Germinal Matrix	brain
9	chr11:57742800-57744000	Weak transcription	HepG2	liver
10	chr11:57742800-57744200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
11	chr11:57742800-57745000	Weak transcription	Pancreas	Pancrea
12	chr11:57742800-57745200	Weak transcription	Cortex derived primary cultured neurospheres	brain
13	chr11:57742800-57747000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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