Variant report

Variant	rs7948282
Chromosome Location	chr11:57742393-57742394
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:57735311..57737451-chr11:57741969..57744523,2	K562	blood:

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs1466057	1.00[YRI][hapmap]
rs1553826	1.00[AFR][1000 genomes]
rs1588435	1.00[AFR][1000 genomes]
rs1941721	1.00[YRI][hapmap];0.85[AFR][1000 genomes]
rs2441959	0.91[AFR][1000 genomes]
rs2926660	0.85[AFR][1000 genomes]
rs2969945	0.85[AFR][1000 genomes]
rs3851122	0.91[AFR][1000 genomes]
rs600251	0.85[AFR][1000 genomes]
rs603420	0.85[AFR][1000 genomes]
rs610801	0.85[AFR][1000 genomes]
rs621683	0.90[AFR][1000 genomes]
rs621731	1.00[YRI][hapmap];0.90[AFR][1000 genomes]
rs635536	0.80[AFR][1000 genomes]
rs6591449	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs660400	0.85[AFR][1000 genomes]
rs667459	0.81[AFR][1000 genomes]
rs682785	0.90[AFR][1000 genomes]
rs7122654	0.91[AFR][1000 genomes]
rs7125096	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044030	chr11:57073395-58035564	Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS Strong transcription Enhancers Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	136 gene(s)	inside rSNPs	diseases
2	nsv541047	chr11:57073395-58035564	Active TSS Enhancers Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	136 gene(s)	inside rSNPs	diseases
3	nsv1054205	chr11:57544264-58358509	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
4	nsv897589	chr11:57623815-58052357	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
5	nsv517822	chr11:57728993-57751001	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:57738800-57745200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr11:57739000-57742400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr11:57740600-57742800	Enhancers	HepG2	liver
4	chr11:57741600-57743400	Enhancers	HSMM	muscle
5	chr11:57741600-57743600	Enhancers	HSMMtube	muscle
6	chr11:57742200-57742600	Enhancers	Brain Hippocampus Middle	brain
7	chr11:57742200-57742800	Enhancers	Cortex derived primary cultured neurospheres	brain
8	chr11:57742200-57742800	Enhancers	Brain Angular Gyrus	brain
9	chr11:57742200-57742800	Enhancers	Pancreas	Pancrea
10	chr11:57742200-57743000	Enhancers	Muscle Satellite Cultured Cells	--

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links