Variant report
Variant | rs11231802 |
---|---|
Chromosome Location | chr11:64280204-64280205 |
allele | A/C |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:9)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
(count:9 , 50 per page) page:
1
No. | Distal block | Cell Line | Cell type | Cell Stage |
---|---|---|---|---|
1 | chr11:64279333..64280848-chr11:64285426..64287058,2 | K562 | blood: | |
2 | 11:64276938-64282570..11:64415880-64426617 | H1-hESC | embryonic stem cell: | embryo |
3 | 11:64276938-64282570..11:64544826-64559210 | Hela-S3 | cervix: | |
4 | chr11:64279333..64282516-chr11:64285092..64287764,5 | K562 | blood: | |
5 | 11:64276938-64282570..11:64489786-64499245 | K562 | blood: | |
6 | 11:64276938-64282570..11:64501239-64517861 | Hela-S3 | cervix: | |
7 | 11:64276938-64282570..11:64523887-64530985 | Hela-S3 | cervix: | |
8 | 11:64207610-64216678..11:64276938-64282570 | K562 | blood: | |
9 | 11:64276938-64282570..11:64402707-64415880 | GM12878 | blood: |
No data |
No data |
No data |
Variant related genes | Relation type |
---|---|
ENSG00000269038 | Chromatin interaction |
ENSG00000168066 | Chromatin interaction |
ENSG00000181908 | Chromatin interaction |
ENSG00000110076 | Chromatin interaction |
ENSG00000068831 | Chromatin interaction |
ENSG00000068976 | Chromatin interaction |
ENSG00000237410 | Chromatin interaction |
ENSG00000269290 | Chromatin interaction |
rs_ID | r2[population] |
---|---|
rs12285139 | 0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.80[ASN][1000 genomes] |
rs12289479 | 0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.80[ASN][1000 genomes] |
rs473379 | 1.00[EUR][1000 genomes] |
rs494998 | 1.00[EUR][1000 genomes] |
rs539810 | 1.00[EUR][1000 genomes] |
rs61241209 | 1.00[EUR][1000 genomes] |
rs7112596 | 1.00[EUR][1000 genomes];0.80[ASN][1000 genomes] |
rs7127435 | 0.80[ASN][1000 genomes] |
rs73488236 | 1.00[EUR][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv832187 | chr11:64121969-64312300 | Genic enhancers Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 50 gene(s) | inside rSNPs | diseases |
2 | nsv1035485 | chr11:64228847-64354869 | Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Bivalent/Poised TSS Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 16 gene(s) | inside rSNPs | diseases |
No data |