Variant report

Variant	rs12289479
Chromosome Location	chr11:64290252-64290253
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs11231799	0.86[ASN][1000 genomes]
rs11231802	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs11231811	0.95[ASN][1000 genomes]
rs11231812	0.95[ASN][1000 genomes]
rs12285139	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs473379	1.00[EUR][1000 genomes]
rs494998	1.00[EUR][1000 genomes]
rs539810	1.00[EUR][1000 genomes]
rs56810477	0.95[ASN][1000 genomes]
rs61241209	1.00[EUR][1000 genomes]
rs6591855	0.86[ASN][1000 genomes]
rs7112596	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7127435	1.00[ASN][1000 genomes]
rs73488236	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832187	chr11:64121969-64312300	Genic enhancers Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv1035485	chr11:64228847-64354869	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:64287400-64290400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr11:64289600-64290400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr11:64289600-64293800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr11:64289800-64290400	Enhancers	Brain Anterior Caudate	brain
5	chr11:64289800-64293600	Enhancers	Primary hematopoietic stem cells short term culture	blood
6	chr11:64290000-64290800	Enhancers	Primary monocytes fromperipheralblood	blood
7	chr11:64290000-64291400	Enhancers	Primary hematopoietic stem cells	blood
8	chr11:64290200-64290800	Enhancers	Monocytes-CD14+_RO01746	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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