Variant report

Variant	rs56810477
Chromosome Location	chr11:64305257-64305258
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10536543	0.81[ASN][1000 genomes]
rs11231799	0.82[ASN][1000 genomes]
rs11231811	1.00[ASN][1000 genomes]
rs11231812	1.00[ASN][1000 genomes]
rs12285139	0.95[ASN][1000 genomes]
rs12289479	0.95[ASN][1000 genomes]
rs56369910	0.81[ASN][1000 genomes]
rs6591855	0.82[ASN][1000 genomes]
rs7112596	0.95[ASN][1000 genomes]
rs7127435	0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832187	chr11:64121969-64312300	Genic enhancers Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv1035485	chr11:64228847-64354869	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:64299800-64305600	Weak transcription	Fetal Thymus	thymus
2	chr11:64302400-64306000	Weak transcription	Placenta	Placenta
3	chr11:64302600-64306800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr11:64302800-64306000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr11:64303400-64305400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr11:64303800-64305800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr11:64304000-64305600	Enhancers	Hela-S3	cervix
8	chr11:64304000-64305800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr11:64304000-64308400	Enhancers	Primary hematopoietic stem cells	blood
10	chr11:64304000-64310800	Enhancers	Primary hematopoietic stem cells short term culture	blood
11	chr11:64304400-64306000	Weak transcription	Aorta	Aorta
12	chr11:64305000-64311200	Enhancers	Breast Myoepithelial Primary Cells	Breast
13	chr11:64305200-64307200	Enhancers	Brain Hippocampus Middle	brain
14	chr11:64305200-64307600	Enhancers	Adipose Nuclei	Adipose

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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