Variant report

Variant	rs11231812
Chromosome Location	chr11:64306409-64306410
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 69 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:65)

rs_ID	r²[population]
rs10466694	1.00[EUR][1000 genomes]
rs10536543	0.81[ASN][1000 genomes]
rs10732887	1.00[EUR][1000 genomes]
rs11231799	0.82[ASN][1000 genomes]
rs11231806	1.00[EUR][1000 genomes]
rs11231811	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11231865	1.00[EUR][1000 genomes]
rs11231866	1.00[EUR][1000 genomes]
rs11821081	1.00[EUR][1000 genomes]
rs1212539	1.00[EUR][1000 genomes]
rs1212851	1.00[EUR][1000 genomes]
rs12273948	1.00[EUR][1000 genomes]
rs12281931	1.00[EUR][1000 genomes]
rs12285139	0.95[ASN][1000 genomes]
rs12289479	0.95[ASN][1000 genomes]
rs12293573	1.00[EUR][1000 genomes]
rs17146100	1.00[EUR][1000 genomes]
rs17146110	1.00[EUR][1000 genomes]
rs1787671	1.00[EUR][1000 genomes]
rs2022049	1.00[EUR][1000 genomes]
rs2518908	1.00[EUR][1000 genomes]
rs2666561	1.00[EUR][1000 genomes]
rs2666562	1.00[EUR][1000 genomes]
rs2904961	1.00[EUR][1000 genomes]
rs2959651	1.00[EUR][1000 genomes]
rs3016758	1.00[EUR][1000 genomes]
rs41323046	1.00[EUR][1000 genomes]
rs475704	1.00[EUR][1000 genomes]
rs4930167	1.00[EUR][1000 genomes]
rs512926	1.00[EUR][1000 genomes]
rs516041	1.00[EUR][1000 genomes]
rs518698	1.00[EUR][1000 genomes]
rs520277	1.00[EUR][1000 genomes]
rs534073	1.00[EUR][1000 genomes]
rs535606	1.00[EUR][1000 genomes]
rs541305	1.00[EUR][1000 genomes]
rs545167	1.00[EUR][1000 genomes]
rs545819	1.00[EUR][1000 genomes]
rs546323	1.00[EUR][1000 genomes]
rs550930	1.00[EUR][1000 genomes]
rs553618	1.00[EUR][1000 genomes]
rs559095	1.00[EUR][1000 genomes]
rs559977	1.00[EUR][1000 genomes]
rs56186064	1.00[EUR][1000 genomes]
rs56369910	0.81[ASN][1000 genomes]
rs565688	1.00[EUR][1000 genomes]
rs56810477	1.00[ASN][1000 genomes]
rs573545	1.00[EUR][1000 genomes]
rs57371796	1.00[EUR][1000 genomes]
rs579175	1.00[EUR][1000 genomes]
rs58571986	1.00[EUR][1000 genomes]
rs6591855	0.82[ASN][1000 genomes]
rs6591863	1.00[EUR][1000 genomes]
rs7110778	1.00[EUR][1000 genomes]
rs7112596	0.95[ASN][1000 genomes]
rs7127435	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73492139	1.00[EUR][1000 genomes]
rs73492140	1.00[EUR][1000 genomes]
rs73492144	1.00[EUR][1000 genomes]
rs73494206	1.00[EUR][1000 genomes]
rs7948607	1.00[EUR][1000 genomes]
rs9326433	1.00[EUR][1000 genomes]
rs9326434	1.00[EUR][1000 genomes]
rs9666331	1.00[EUR][1000 genomes]
rs9666856	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832187	chr11:64121969-64312300	Genic enhancers Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv1035485	chr11:64228847-64354869	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
3	nsv897692	chr11:64305452-64386526	Bivalent/Poised TSS Genic enhancers Weak transcription Strong transcription Enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	12 gene(s)	inside rSNPs	diseases
4	nsv897693	chr11:64305452-64440920	Enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Flanking Active TSS Strong transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:64302600-64306800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr11:64304000-64308400	Enhancers	Primary hematopoietic stem cells	blood
3	chr11:64304000-64310800	Enhancers	Primary hematopoietic stem cells short term culture	blood
4	chr11:64305000-64311200	Enhancers	Breast Myoepithelial Primary Cells	Breast
5	chr11:64305200-64307200	Enhancers	Brain Hippocampus Middle	brain
6	chr11:64305200-64307600	Enhancers	Adipose Nuclei	Adipose
7	chr11:64305400-64306800	Enhancers	Primary monocytes fromperipheralblood	blood
8	chr11:64305400-64307000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr11:64305400-64307800	Enhancers	Fetal Brain Female	brain
10	chr11:64305400-64308000	Enhancers	Fetal Brain Male	brain
11	chr11:64305600-64307400	Bivalent Enhancer	Fetal Muscle Trunk	muscle
12	chr11:64305600-64307800	Enhancers	Fetal Thymus	thymus
13	chr11:64305600-64310000	Weak transcription	Hela-S3	cervix
14	chr11:64305800-64306600	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
15	chr11:64305800-64308000	Enhancers	Brain Cingulate Gyrus	brain
16	chr11:64306000-64307000	Enhancers	Aorta	Aorta
17	chr11:64306000-64308200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
18	chr11:64306000-64309000	Enhancers	Placenta	Placenta
19	chr11:64306200-64306800	Enhancers	Brain Inferior Temporal Lobe	brain
20	chr11:64306200-64307000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
21	chr11:64306200-64307400	Enhancers	Cortex derived primary cultured neurospheres	brain
22	chr11:64306200-64307600	Enhancers	Primary B cells from cord blood	blood
23	chr11:64306200-64308000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
24	chr11:64306200-64309800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
25	chr11:64306400-64306600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
26	chr11:64306400-64308600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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