Variant report

Variant	rs518698
Chromosome Location	chr11:64170500-64170501
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:64166187..64170044-chr11:64170239..64173432,3	K562	blood:
2	chr11:64167785..64169689-chr11:64170105..64171760,2	MCF-7	breast:

Extended variants
information (count: 77 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:75)

rs_ID	r²[population]
rs10128595	1.00[TSI][hapmap]
rs10128649	0.82[ASN][1000 genomes]
rs10556	0.80[ASN][1000 genomes]
rs10732887	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11231806	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs11231811	1.00[EUR][1000 genomes]
rs11231812	1.00[EUR][1000 genomes]
rs1124660	1.00[MEX][hapmap]
rs1207462	0.89[CHB][hapmap];0.88[CHD][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs1213140	0.83[ASN][1000 genomes]
rs12281471	0.87[ASN][1000 genomes]
rs12281931	1.00[EUR][1000 genomes]
rs12283639	0.87[ASN][1000 genomes]
rs12287065	0.80[ASN][1000 genomes]
rs12293573	1.00[EUR][1000 genomes]
rs12574188	0.89[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs12575515	0.89[CHB][hapmap];0.88[CHD][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs12575690	0.89[ASN][1000 genomes]
rs12577422	1.00[ASN][1000 genomes]
rs12577425	0.86[CHB][hapmap];0.93[ASN][1000 genomes]
rs1320688	0.87[CHD][hapmap]
rs1468558	0.89[CHB][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.80[ASN][1000 genomes]
rs17146100	1.00[EUR][1000 genomes]
rs17146110	1.00[EUR][1000 genomes]
rs17159027	0.89[CHB][hapmap];0.82[ASN][1000 genomes]
rs1783518	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs1783519	0.81[AMR][1000 genomes]
rs2022048	1.00[TSI][hapmap]
rs2022049	1.00[EUR][1000 genomes]
rs2079786	0.81[CHB][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap]
rs2232410	0.89[CHB][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.82[ASN][1000 genomes]
rs2282548	0.89[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs2286612	0.89[CHB][hapmap];1.00[MEX][hapmap]
rs2289572	0.89[ASN][1000 genomes]
rs2302262	0.89[CHB][hapmap];1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs3759056	0.87[ASN][1000 genomes]
rs41294376	0.81[ASN][1000 genomes]
rs473379	0.98[ASN][1000 genomes]
rs474430	0.96[ASN][1000 genomes]
rs490720	0.98[ASN][1000 genomes]
rs4930167	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs493052	0.89[CHB][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.81[ASN][1000 genomes]
rs494998	0.98[ASN][1000 genomes]
rs4963221	0.88[ASN][1000 genomes]
rs497544	1.00[GIH][hapmap]
rs520277	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs522970	1.00[AMR][1000 genomes]
rs539008	0.98[ASN][1000 genomes]
rs539250	1.00[ASN][1000 genomes]
rs543767	0.96[ASN][1000 genomes]
rs554812	0.98[ASN][1000 genomes]
rs569741	0.98[ASN][1000 genomes]
rs57371796	1.00[EUR][1000 genomes]
rs575081	0.98[ASN][1000 genomes]
rs58010797	0.96[ASN][1000 genomes]
rs58488481	0.98[ASN][1000 genomes]
rs58721876	0.80[ASN][1000 genomes]
rs59283629	0.80[ASN][1000 genomes]
rs60421451	0.82[ASN][1000 genomes]
rs605597	1.00[TSI][hapmap]
rs60579179	0.96[ASN][1000 genomes]
rs61431997	1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs621816	0.80[ASN][1000 genomes]
rs7110262	0.80[ASN][1000 genomes]
rs7110778	1.00[EUR][1000 genomes]
rs7121001	1.00[ASN][1000 genomes]
rs7127435	1.00[EUR][1000 genomes]
rs73492139	1.00[EUR][1000 genomes]
rs73492140	1.00[EUR][1000 genomes]
rs73492144	1.00[EUR][1000 genomes]
rs7948607	1.00[EUR][1000 genomes]
rs7950922	0.87[ASN][1000 genomes]
rs7951858	0.82[ASN][1000 genomes]
rs7952435	0.81[CHB][hapmap];0.88[CHD][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap]
rs9666856	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv897682	chr11:63999529-64170500	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	164 gene(s)	inside rSNPs	diseases
2	nsv832187	chr11:64121969-64312300	Genic enhancers Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:64164000-64170600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr11:64164400-64171800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr11:64165800-64171400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr11:64168000-64173400	Weak transcription	Duodenum Smooth Muscle	Duodenum
5	chr11:64168200-64173000	Weak transcription	Placenta Amnion	Placenta Amnion
6	chr11:64168400-64173600	Weak transcription	Spleen	Spleen
7	chr11:64169000-64171400	Weak transcription	Primary monocytes fromperipheralblood	blood
8	chr11:64169200-64171400	Weak transcription	Monocytes-CD14+_RO01746	blood
9	chr11:64170400-64170800	Enhancers	ES-I3 Cell Line	embryonic stem cell
10	chr11:64170400-64171000	Enhancers	Fetal Brain Male	brain

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