Variant report

Variant	rs61431997
Chromosome Location	chr11:64024568-64024569
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 94 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:62)

rs_ID	r²[population]
rs10128595	0.82[ASN][1000 genomes]
rs10128649	0.98[ASN][1000 genomes]
rs10556	1.00[ASN][1000 genomes]
rs10732887	1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1124660	0.85[ASN][1000 genomes]
rs1207462	0.82[ASN][1000 genomes]
rs1213140	0.93[ASN][1000 genomes]
rs12271952	0.88[ASN][1000 genomes]
rs12281471	0.93[ASN][1000 genomes]
rs12283639	0.93[ASN][1000 genomes]
rs12287065	1.00[ASN][1000 genomes]
rs12574188	0.82[ASN][1000 genomes]
rs12575515	0.82[ASN][1000 genomes]
rs12575690	0.91[ASN][1000 genomes]
rs12577422	0.80[ASN][1000 genomes]
rs1468558	1.00[ASN][1000 genomes]
rs17159027	0.98[ASN][1000 genomes]
rs1783518	0.80[ASN][1000 genomes]
rs2154977	1.00[EUR][1000 genomes]
rs2232410	0.98[ASN][1000 genomes]
rs2282548	0.93[ASN][1000 genomes]
rs2286612	0.90[ASN][1000 genomes]
rs2289572	0.91[ASN][1000 genomes]
rs2302262	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28682946	0.82[ASN][1000 genomes]
rs320134	1.00[EUR][1000 genomes]
rs320136	1.00[EUR][1000 genomes]
rs3759056	0.93[ASN][1000 genomes]
rs3897565	1.00[EUR][1000 genomes]
rs41294376	0.91[ASN][1000 genomes]
rs41294424	0.82[ASN][1000 genomes]
rs473379	0.82[ASN][1000 genomes]
rs490720	0.82[ASN][1000 genomes]
rs4930167	1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs493052	0.95[ASN][1000 genomes]
rs494998	0.82[ASN][1000 genomes]
rs518698	1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs520277	1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs531658	1.00[EUR][1000 genomes]
rs539008	0.82[ASN][1000 genomes]
rs539250	0.80[ASN][1000 genomes]
rs554812	0.82[ASN][1000 genomes]
rs569741	0.82[ASN][1000 genomes]
rs57371796	1.00[EUR][1000 genomes]
rs575081	0.82[ASN][1000 genomes]
rs58010797	0.80[ASN][1000 genomes]
rs58488481	0.82[ASN][1000 genomes]
rs58721876	1.00[ASN][1000 genomes]
rs59283629	1.00[ASN][1000 genomes]
rs59863478	1.00[EUR][1000 genomes]
rs60421451	0.98[ASN][1000 genomes]
rs60579179	0.80[ASN][1000 genomes]
rs621816	1.00[ASN][1000 genomes]
rs7110262	1.00[ASN][1000 genomes]
rs7121001	0.80[ASN][1000 genomes]
rs73498137	1.00[EUR][1000 genomes]
rs73498145	1.00[EUR][1000 genomes]
rs747621	1.00[EUR][1000 genomes]
rs7950922	0.93[ASN][1000 genomes]
rs7951858	0.98[ASN][1000 genomes]
rs7952435	0.83[ASN][1000 genomes]
rs9666856	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:32 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv897631	chr11:63664882-64129722	Flanking Active TSS Strong transcription Enhancers Weak transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	254 gene(s)	inside rSNPs	diseases
2	esv1802079	chr11:63746066-64151373	Bivalent Enhancer Flanking Active TSS Weak transcription Enhancers Genic enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	247 gene(s)	inside rSNPs	diseases
3	nsv897646	chr11:63754986-64150370	Strong transcription Weak transcription Bivalent Enhancer Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	245 gene(s)	inside rSNPs	diseases
4	nsv1035875	chr11:63800238-64132030	Weak transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	234 gene(s)	inside rSNPs	diseases
5	nsv469961	chr11:63822940-64085967	Weak transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Enhancers Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	224 gene(s)	inside rSNPs	diseases
6	nsv897660	chr11:63860826-64125142	Weak transcription Active TSS Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	231 gene(s)	inside rSNPs	diseases
7	nsv897661	chr11:63863405-64129722	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	233 gene(s)	inside rSNPs	diseases
8	nsv897662	chr11:63889749-64150370	Flanking Active TSS Enhancers Weak transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	237 gene(s)	inside rSNPs	diseases
9	nsv897664	chr11:63919742-64150370	Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	237 gene(s)	inside rSNPs	diseases
10	nsv468592	chr11:63924446-64042997	Enhancers Flanking Active TSS Strong transcription Active TSS Weak transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	166 gene(s)	inside rSNPs	diseases
11	nsv555184	chr11:63924446-64042997	Genic enhancers Enhancers Flanking Active TSS Active TSS Strong transcription Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	166 gene(s)	inside rSNPs	diseases
12	nsv897665	chr11:63927695-64026144	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	155 gene(s)	inside rSNPs	diseases
13	nsv897666	chr11:63929493-64026144	Enhancers Active TSS Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	155 gene(s)	inside rSNPs	diseases
14	nsv869944	chr11:63932152-64123062	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	227 gene(s)	inside rSNPs	diseases
15	nsv468593	chr11:63941734-64089874	Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Enhancers Genic enhancers Strong transcription Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	212 gene(s)	inside rSNPs	diseases
16	nsv555185	chr11:63941734-64089874	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	212 gene(s)	inside rSNPs	diseases
17	nsv555186	chr11:63949095-64097233	Weak transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Enhancers Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	212 gene(s)	inside rSNPs	diseases
18	nsv468595	chr11:63953121-64027888	Enhancers Flanking Active TSS Active TSS Weak transcription Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	146 gene(s)	inside rSNPs	diseases
19	nsv555187	chr11:63953121-64027888	Strong transcription Weak transcription Transcr. at gene 5' and 3' Active TSS Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	146 gene(s)	inside rSNPs	diseases
20	nsv897667	chr11:63964657-64078380	Enhancers Strong transcription Flanking Active TSS Weak transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	141 gene(s)	inside rSNPs	diseases
21	nsv897668	chr11:63964657-64085298	Weak transcription Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Enhancers Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	163 gene(s)	inside rSNPs	diseases
22	nsv897669	chr11:63964657-64089874	Genic enhancers Weak transcription Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	164 gene(s)	inside rSNPs	diseases
23	nsv897670	chr11:63964657-64097233	Flanking Active TSS Weak transcription Active TSS Enhancers Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	164 gene(s)	inside rSNPs	diseases
24	nsv897671	chr11:63964657-64150370	Active TSS Flanking Active TSS Genic enhancers Weak transcription Enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	179 gene(s)	inside rSNPs	diseases
25	nsv832186	chr11:63972260-64170059	Active TSS Genic enhancers Weak transcription Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	180 gene(s)	inside rSNPs	diseases
26	nsv897672	chr11:63979643-64082807	Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer Weak transcription Strong transcription Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	140 gene(s)	inside rSNPs	diseases
27	esv1802320	chr11:63987425-64154633	Active TSS Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Weak transcription Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	178 gene(s)	inside rSNPs	diseases
28	nsv897678	chr11:63994692-64026144	Enhancers Active TSS Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	85 gene(s)	inside rSNPs	diseases
29	nsv897679	chr11:63994692-64150370	Enhancers Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	169 gene(s)	inside rSNPs	diseases
30	nsv541064	chr11:63998625-64036450	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	84 gene(s)	inside rSNPs	diseases
31	nsv897682	chr11:63999529-64170500	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	164 gene(s)	inside rSNPs	diseases
32	nsv1043277	chr11:64002997-64132030	Bivalent/Poised TSS Enhancers Active TSS Flanking Active TSS Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	157 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:120 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:64020000-64027000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr11:64020000-64036400	Weak transcription	Fetal Kidney	kidney
3	chr11:64020200-64030200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
4	chr11:64020200-64034800	Weak transcription	Right Atrium	heart
5	chr11:64020200-64035400	Weak transcription	Primary T helper cells PMA-I stimulated	--
6	chr11:64020400-64026000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
7	chr11:64020400-64026000	Weak transcription	HepG2	liver
8	chr11:64020400-64027000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
9	chr11:64020400-64035200	Weak transcription	Primary B cells from cord blood	blood
10	chr11:64020400-64036000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
11	chr11:64020600-64027200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
12	chr11:64020600-64035000	Weak transcription	Primary hematopoietic stem cells	blood
13	chr11:64020600-64035600	Weak transcription	Primary B cells from peripheral blood	blood
14	chr11:64020800-64029800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr11:64021000-64035600	Weak transcription	Brain Angular Gyrus	brain
16	chr11:64021000-64035600	Weak transcription	Fetal Heart	heart
17	chr11:64021200-64024600	Strong transcription	H9 Cell Line	embryonic stem cell
18	chr11:64021200-64034800	Strong transcription	Fetal Intestine Small	intestine
19	chr11:64021200-64034800	Strong transcription	Sigmoid Colon	Sigmoid Colon
20	chr11:64021200-64035600	Strong transcription	iPS-18 Cell Line	embryonic stem cell
21	chr11:64021400-64025200	Weak transcription	Brain Germinal Matrix	brain
22	chr11:64021400-64026800	Weak transcription	GM12878-XiMat	blood
23	chr11:64021400-64030400	Strong transcription	HUES6 Cell Line	embryonic stem cell
24	chr11:64021400-64035800	Strong transcription	HUES48 Cell Line	embryonic stem cell
25	chr11:64021600-64025600	Weak transcription	Brain Substantia Nigra	brain
26	chr11:64021600-64029200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
27	chr11:64021600-64030000	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
28	chr11:64021600-64030600	Weak transcription	Stomach Mucosa	stomach
29	chr11:64021600-64030800	Strong transcription	H1 Cell Line	embryonic stem cell
30	chr11:64021600-64033800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
31	chr11:64021600-64034000	Strong transcription	Rectal Mucosa Donor 29	rectum
32	chr11:64021600-64034200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
33	chr11:64021800-64028000	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
34	chr11:64021800-64030200	Strong transcription	Muscle Satellite Cultured Cells	--
35	chr11:64021800-64030400	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
36	chr11:64021800-64031000	Strong transcription	Placenta	Placenta
37	chr11:64021800-64031400	Strong transcription	Pancreas	Pancrea
38	chr11:64021800-64034000	Strong transcription	Rectal Mucosa Donor 31	rectum
39	chr11:64021800-64034400	Strong transcription	Stomach Smooth Muscle	stomach
40	chr11:64021800-64034400	Strong transcription	Monocytes-CD14+_RO01746	blood
41	chr11:64021800-64034800	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
42	chr11:64021800-64034800	Strong transcription	Colonic Mucosa	Colon
43	chr11:64021800-64034800	Strong transcription	Fetal Intestine Large	intestine
44	chr11:64022000-64024600	Strong transcription	Gastric	stomach
45	chr11:64022000-64024800	Strong transcription	Esophagus	oesophagus
46	chr11:64022000-64028000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
47	chr11:64022000-64029800	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
48	chr11:64022000-64030200	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
49	chr11:64022000-64031800	Strong transcription	Thymus	Thymus
50	chr11:64022000-64034200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links