Variant report

Variant	rs60579179
Chromosome Location	chr11:64199529-64199530
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	11:64197420-64206402..11:64501239-64517861	GM12878	blood:
2	11:64197420-64206402..11:64402707-64415880	H1-hESC	embryonic stem cell:	embryo
3	11:64197420-64206402..11:64489786-64499245	GM12878	blood:
4	11:64197420-64206402..11:64415880-64426617	Hela-S3	cervix:
5	chr11:64198125..64200052-chr11:64263615..64266038,2	K562	blood:
6	11:64197420-64206402..11:64523887-64530985	Hela-S3	cervix:
7	11:64197420-64206402..11:64356433-64395036	K562	blood:
8	11:64197420-64206402..11:64426650-64437729	K562	blood:

Variant related genes	Relation type
ENSG00000237410	Chromatin interaction
ENSG00000068831	Chromatin interaction
ENSG00000068976	Chromatin interaction
ENSG00000197891	Chromatin interaction
ENSG00000110076	Chromatin interaction

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs10128649	0.82[ASN][1000 genomes]
rs10556	0.80[ASN][1000 genomes]
rs10732887	0.96[ASN][1000 genomes]
rs1207462	0.98[ASN][1000 genomes]
rs12281471	0.87[ASN][1000 genomes]
rs12283639	0.87[ASN][1000 genomes]
rs12287065	0.80[ASN][1000 genomes]
rs12574188	0.98[ASN][1000 genomes]
rs12575515	0.98[ASN][1000 genomes]
rs12575690	0.89[ASN][1000 genomes]
rs12577422	0.96[ASN][1000 genomes]
rs12577425	1.00[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs1468558	0.80[ASN][1000 genomes]
rs17159027	0.82[ASN][1000 genomes]
rs1783518	0.96[ASN][1000 genomes]
rs2232410	0.82[ASN][1000 genomes]
rs2282548	0.87[ASN][1000 genomes]
rs2289572	0.89[ASN][1000 genomes]
rs2302262	0.80[ASN][1000 genomes]
rs34031941	1.00[AMR][1000 genomes]
rs3759056	0.87[ASN][1000 genomes]
rs473379	0.98[ASN][1000 genomes]
rs474430	0.91[ASN][1000 genomes]
rs490720	0.98[ASN][1000 genomes]
rs4930167	0.96[ASN][1000 genomes]
rs493052	0.81[ASN][1000 genomes]
rs494998	0.98[ASN][1000 genomes]
rs4963221	0.88[ASN][1000 genomes]
rs518698	0.96[ASN][1000 genomes]
rs520277	0.96[ASN][1000 genomes]
rs539008	0.98[ASN][1000 genomes]
rs539250	0.96[ASN][1000 genomes]
rs543767	0.91[ASN][1000 genomes]
rs554812	0.98[ASN][1000 genomes]
rs569741	0.98[ASN][1000 genomes]
rs575081	0.98[ASN][1000 genomes]
rs58010797	0.96[ASN][1000 genomes]
rs58488481	0.98[ASN][1000 genomes]
rs58721876	0.80[ASN][1000 genomes]
rs59283629	0.80[ASN][1000 genomes]
rs60421451	0.82[ASN][1000 genomes]
rs61431997	0.80[ASN][1000 genomes]
rs61761279	1.00[AMR][1000 genomes]
rs621816	0.80[ASN][1000 genomes]
rs7110262	0.80[ASN][1000 genomes]
rs7121001	0.96[ASN][1000 genomes]
rs71579895	1.00[AMR][1000 genomes]
rs7950922	0.87[ASN][1000 genomes]
rs7951858	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832187	chr11:64121969-64312300	Genic enhancers Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv976459	chr11:64183936-64208134	Enhancers Bivalent Enhancer Weak transcription Bivalent/Poised TSS Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
3	nsv555194	chr11:64189110-64238023	Active TSS Bivalent Enhancer Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:64197200-64201600	Weak transcription	Fetal Brain Male	brain
2	chr11:64198200-64203800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links