Variant report

Variant	rs543767
Chromosome Location	chr11:64180378-64180379
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10732887	0.96[ASN][1000 genomes]
rs1207462	0.89[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs12281471	0.83[ASN][1000 genomes]
rs12283639	0.83[ASN][1000 genomes]
rs12574188	0.89[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs12575515	0.89[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs12575690	0.85[ASN][1000 genomes]
rs12577422	0.96[ASN][1000 genomes]
rs12577425	0.86[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs1468558	0.89[CHB][hapmap]
rs17159027	0.89[CHB][hapmap]
rs1783518	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs2079786	0.90[CHB][hapmap]
rs2232410	0.89[CHB][hapmap]
rs2282548	0.89[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs2286612	0.89[CHB][hapmap]
rs2289572	0.85[ASN][1000 genomes]
rs2302262	0.89[CHB][hapmap]
rs3759056	0.83[ASN][1000 genomes]
rs473379	0.94[ASN][1000 genomes]
rs474430	0.92[ASN][1000 genomes]
rs490720	0.94[ASN][1000 genomes]
rs4930167	0.96[ASN][1000 genomes]
rs493052	0.89[CHB][hapmap]
rs494998	0.94[ASN][1000 genomes]
rs4963221	0.84[ASN][1000 genomes]
rs518698	0.96[ASN][1000 genomes]
rs520277	0.96[ASN][1000 genomes]
rs539008	0.94[ASN][1000 genomes]
rs539250	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs554812	0.94[ASN][1000 genomes]
rs569741	0.94[ASN][1000 genomes]
rs575081	0.94[ASN][1000 genomes]
rs58010797	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs58488481	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs60579179	0.91[ASN][1000 genomes]
rs7121001	0.96[ASN][1000 genomes]
rs7950922	0.83[ASN][1000 genomes]
rs7952435	0.81[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832187	chr11:64121969-64312300	Genic enhancers Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:64174200-64182200	Weak transcription	Spleen	Spleen
2	chr11:64174400-64182400	Weak transcription	Right Ventricle	heart
3	chr11:64174400-64182600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr11:64174400-64182600	Weak transcription	HUES64 Cell Line	embryonic stem cell
5	chr11:64177000-64182400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr11:64177400-64182600	Weak transcription	HUES6 Cell Line	embryonic stem cell
7	chr11:64178000-64182400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr11:64178000-64184200	Weak transcription	Right Atrium	heart
9	chr11:64178200-64182400	Weak transcription	Fetal Lung	lung
10	chr11:64178200-64182600	Weak transcription	Fetal Thymus	thymus
11	chr11:64178400-64182400	Weak transcription	Fetal Heart	heart
12	chr11:64178400-64182400	Weak transcription	Fetal Stomach	stomach
13	chr11:64178800-64180800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr11:64179000-64182200	Weak transcription	Fetal Muscle Leg	muscle
15	chr11:64179000-64182400	Weak transcription	Placenta	Placenta

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links