Variant report

Variant	rs12281931
Chromosome Location	chr11:64298641-64298642
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 59 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:57)

rs_ID	r²[population]
rs10466694	1.00[EUR][1000 genomes]
rs10732887	1.00[EUR][1000 genomes]
rs11231806	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11231811	1.00[EUR][1000 genomes]
rs11231812	1.00[EUR][1000 genomes]
rs11231865	1.00[EUR][1000 genomes]
rs11231866	1.00[EUR][1000 genomes]
rs11821081	1.00[EUR][1000 genomes]
rs1212539	1.00[EUR][1000 genomes]
rs1212851	1.00[EUR][1000 genomes]
rs12273948	1.00[EUR][1000 genomes]
rs12293573	1.00[EUR][1000 genomes]
rs17146100	1.00[EUR][1000 genomes]
rs17146110	1.00[EUR][1000 genomes]
rs1787671	1.00[EUR][1000 genomes]
rs2022049	1.00[EUR][1000 genomes]
rs2518908	1.00[EUR][1000 genomes]
rs2666561	1.00[EUR][1000 genomes]
rs2666562	1.00[EUR][1000 genomes]
rs2904961	1.00[EUR][1000 genomes]
rs2959651	1.00[EUR][1000 genomes]
rs3016758	1.00[EUR][1000 genomes]
rs41323046	1.00[EUR][1000 genomes]
rs475704	1.00[EUR][1000 genomes]
rs4930167	1.00[EUR][1000 genomes]
rs512926	1.00[EUR][1000 genomes]
rs516041	1.00[EUR][1000 genomes]
rs518698	1.00[EUR][1000 genomes]
rs520277	1.00[EUR][1000 genomes]
rs534073	1.00[EUR][1000 genomes]
rs535606	1.00[EUR][1000 genomes]
rs541305	1.00[EUR][1000 genomes]
rs545167	1.00[EUR][1000 genomes]
rs545819	1.00[EUR][1000 genomes]
rs546323	1.00[EUR][1000 genomes]
rs550930	1.00[EUR][1000 genomes]
rs553618	1.00[EUR][1000 genomes]
rs559095	1.00[EUR][1000 genomes]
rs559977	1.00[EUR][1000 genomes]
rs56186064	1.00[EUR][1000 genomes]
rs565688	1.00[EUR][1000 genomes]
rs573545	1.00[EUR][1000 genomes]
rs57371796	1.00[EUR][1000 genomes]
rs579175	1.00[EUR][1000 genomes]
rs58571986	1.00[EUR][1000 genomes]
rs6591863	1.00[EUR][1000 genomes]
rs7110778	1.00[EUR][1000 genomes]
rs7127435	1.00[EUR][1000 genomes]
rs73492139	1.00[EUR][1000 genomes]
rs73492140	1.00[EUR][1000 genomes]
rs73492144	1.00[EUR][1000 genomes]
rs73494206	1.00[EUR][1000 genomes]
rs7948607	1.00[EUR][1000 genomes]
rs9326433	1.00[EUR][1000 genomes]
rs9326434	1.00[EUR][1000 genomes]
rs9666331	1.00[EUR][1000 genomes]
rs9666856	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832187	chr11:64121969-64312300	Genic enhancers Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv1035485	chr11:64228847-64354869	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:64292800-64304000	Weak transcription	Right Atrium	heart
2	chr11:64293800-64299200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr11:64293800-64299400	Weak transcription	Primary hematopoietic stem cells	blood
4	chr11:64294000-64299000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr11:64297800-64299600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links