Variant report

Variant	rs9326434
Chromosome Location	chr11:64555997-64555998
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:3)
CpG islands
(count:0)
Chromatin interactive
region (count:13)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:3 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr11:64555899-64556176	GM12878	blood:	n/a	n/a
2	POLR2A	chr11:64555049-64556241	HL-60	blood:	n/a	n/a
3	POLR2A	chr11:64555912-64556333	GM12878	blood:	n/a	n/a

No data

(count:13 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:64542963..64545038-chr11:64555402..64557551,2	MCF-7	breast:
2	chr11:64553885..64556616-chr11:64565679..64568221,3	K562	blood:
3	chr11:64544768..64548246-chr11:64552203..64559348,13	K562	blood:
4	11:64544826-64559210..11:64658316-64660295	GM12878	blood:
5	chr11:64511669..64513452-chr11:64554077..64556439,2	K562	blood:
6	chr11:64549169..64551642-chr11:64554588..64557105,4	MCF-7	breast:
7	chr11:64548398..64551598-chr11:64553767..64558292,4	K562	blood:
8	chr11:64554870..64556800-chr11:64601823..64604473,2	MCF-7	breast:
9	chr11:64546932..64549116-chr11:64555814..64557737,2	MCF-7	breast:
10	chr11:64554472..64555999-chr11:64645762..64648343,2	MCF-7	breast:
11	chr11:64553372..64556987-chr11:64559912..64562613,3	MCF-7	breast:
12	chr11:64553375..64557754-chr11:64610742..64616097,7	K562	blood:
13	chr11:64550295..64559770-chr11:64606799..64612778,15	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000269290	TF binding region
ENSG00000068831	Chromatin interaction
ENSG00000269038	Chromatin interaction
ENSG00000229719	Chromatin interaction
ENSG00000207648	Chromatin interaction
ENSG00000267804	Chromatin interaction
ENSG00000168066	Chromatin interaction
ENSG00000168067	Chromatin interaction
ENSG00000110047	Chromatin interaction
ENSG00000171219	Chromatin interaction

Extended variants
information (count: 79 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:59)

rs_ID	r²[population]
rs10466694	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11231806	1.00[EUR][1000 genomes]
rs11231811	1.00[EUR][1000 genomes]
rs11231812	1.00[EUR][1000 genomes]
rs11231865	1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs11231866	1.00[EUR][1000 genomes]
rs11231892	1.00[MEX][hapmap]
rs11821081	1.00[ASW][hapmap];0.94[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1212539	1.00[EUR][1000 genomes]
rs1212851	1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs12273948	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12280878	1.00[TSI][hapmap]
rs12281931	1.00[EUR][1000 genomes]
rs12293573	1.00[EUR][1000 genomes]
rs17146100	1.00[EUR][1000 genomes]
rs17146110	1.00[EUR][1000 genomes]
rs17146119	1.00[MEX][hapmap];1.00[TSI][hapmap]
rs1787671	1.00[EUR][1000 genomes]
rs2022048	1.00[TSI][hapmap]
rs2022049	1.00[EUR][1000 genomes]
rs2518908	1.00[EUR][1000 genomes]
rs2666561	1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs2666562	1.00[EUR][1000 genomes]
rs2904961	1.00[EUR][1000 genomes]
rs2959651	1.00[EUR][1000 genomes]
rs3016758	1.00[EUR][1000 genomes]
rs41323046	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs475704	1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs512926	1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs516041	1.00[EUR][1000 genomes]
rs534052	1.00[MEX][hapmap];1.00[TSI][hapmap]
rs534073	1.00[EUR][1000 genomes]
rs535606	1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs541305	1.00[EUR][1000 genomes]
rs545167	1.00[EUR][1000 genomes]
rs545819	1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs546323	1.00[EUR][1000 genomes]
rs547280	1.00[MEX][hapmap];1.00[TSI][hapmap]
rs550930	1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs553618	1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs559095	1.00[EUR][1000 genomes]
rs559977	1.00[EUR][1000 genomes]
rs56186064	1.00[EUR][1000 genomes]
rs565688	1.00[EUR][1000 genomes]
rs573545	1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs579175	1.00[EUR][1000 genomes]
rs58571986	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6591863	1.00[ASW][hapmap];0.94[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7110778	1.00[EUR][1000 genomes]
rs7113097	1.00[EUR][1000 genomes]
rs73492139	1.00[EUR][1000 genomes]
rs73492140	1.00[EUR][1000 genomes]
rs73492144	1.00[EUR][1000 genomes]
rs73494206	1.00[EUR][1000 genomes]
rs7927181	1.00[TSI][hapmap]
rs7948607	1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs7948832	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs9326433	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9666331	0.89[ASW][hapmap];1.00[MEX][hapmap];0.81[MKK][hapmap];1.00[TSI][hapmap];0.89[YRI][hapmap];0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:20 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv897694	chr11:64334114-64584959	Weak transcription Bivalent/Poised TSS Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Active TSS Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	83 gene(s)	inside rSNPs	diseases
2	nsv528506	chr11:64345448-64701030	Strong transcription Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	1075 gene(s)	inside rSNPs	diseases
3	nsv555196	chr11:64357072-64559898	Enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	77 gene(s)	inside rSNPs	diseases
4	nsv897695	chr11:64357072-64701030	Weak transcription Genic enhancers Enhancers Active TSS Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	1075 gene(s)	inside rSNPs	diseases
5	nsv555198	chr11:64373899-64573589	Weak transcription Transcr. at gene 5' and 3' Genic enhancers Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	80 gene(s)	inside rSNPs	diseases
6	nsv897697	chr11:64447420-64584959	Flanking Bivalent TSS/Enh Weak transcription Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	79 gene(s)	inside rSNPs	diseases
7	nsv897698	chr11:64447420-64621573	Active TSS Bivalent Enhancer Genic enhancers Enhancers Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	82 gene(s)	inside rSNPs	diseases
8	nsv897699	chr11:64447420-64638041	Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Strong transcription Enhancers Weak transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	83 gene(s)	inside rSNPs	diseases
9	nsv897700	chr11:64447420-64701030	Flanking Active TSS Enhancers Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	1071 gene(s)	inside rSNPs	diseases
10	nsv555202	chr11:64477050-64573589	Strong transcription Bivalent/Poised TSS Enhancers Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
11	nsv468597	chr11:64477050-64584959	Enhancers Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	77 gene(s)	inside rSNPs	diseases
12	nsv468598	chr11:64477050-64584959	Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Active TSS Enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	77 gene(s)	inside rSNPs	diseases
13	nsv555203	chr11:64477050-64584959	Strong transcription Genic enhancers Bivalent Enhancer Active TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	77 gene(s)	inside rSNPs	diseases
14	nsv1049744	chr11:64486615-64630149	Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Active TSS Weak transcription Enhancers Genic enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	79 gene(s)	inside rSNPs	diseases
15	nsv832189	chr11:64487183-64620199	Weak transcription Transcr. at gene 5' and 3' Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	79 gene(s)	inside rSNPs	diseases
16	nsv469962	chr11:64527080-64621573	Flanking Active TSS Enhancers Weak transcription Genic enhancers Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	72 gene(s)	inside rSNPs	diseases
17	nsv897702	chr11:64532579-64584231	Transcr. at gene 5' and 3' Strong transcription Weak transcription Genic enhancers Flanking Active TSS Enhancers Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
18	nsv897703	chr11:64538346-64574200	Strong transcription Transcr. at gene 5' and 3' Active TSS Weak transcription Flanking Active TSS Enhancers Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	62 gene(s)	inside rSNPs	diseases
19	nsv519117	chr11:64546391-64573589	Weak transcription Strong transcription Flanking Active TSS Enhancers Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
20	nsv519478	chr11:64546391-64584987	Flanking Active TSS Enhancers Weak transcription Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:110 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:64546000-64556000	Weak transcription	Gastric	stomach
2	chr11:64546200-64556200	Weak transcription	Ovary	ovary
3	chr11:64547200-64556000	Weak transcription	Cortex derived primary cultured neurospheres	brain
4	chr11:64547200-64556200	Weak transcription	Esophagus	oesophagus
5	chr11:64547200-64556400	Weak transcription	Sigmoid Colon	Sigmoid Colon
6	chr11:64547200-64556600	Weak transcription	Muscle Satellite Cultured Cells	--
7	chr11:64547200-64556600	Weak transcription	Brain Cingulate Gyrus	brain
8	chr11:64547200-64557200	Weak transcription	Aorta	Aorta
9	chr11:64547200-64557400	Weak transcription	H9 Cell Line	embryonic stem cell
10	chr11:64547200-64561000	Weak transcription	Fetal Heart	heart
11	chr11:64547200-64563200	Weak transcription	Skeletal Muscle Female	skeletal muscle
12	chr11:64547200-64569600	Weak transcription	Small Intestine	intestine
13	chr11:64547200-64569600	Weak transcription	NH-A	brain
14	chr11:64547200-64569800	Weak transcription	Osteobl	bone
15	chr11:64547200-64570000	Weak transcription	Fetal Kidney	kidney
16	chr11:64547400-64556000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
17	chr11:64547400-64556000	Weak transcription	Adipose Nuclei	Adipose
18	chr11:64547400-64556000	Weak transcription	Brain Anterior Caudate	brain
19	chr11:64547400-64556200	Weak transcription	Placenta Amnion	Placenta Amnion
20	chr11:64547400-64556200	Weak transcription	Stomach Smooth Muscle	stomach
21	chr11:64547400-64557000	Weak transcription	HUES6 Cell Line	embryonic stem cell
22	chr11:64547400-64557200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
23	chr11:64547400-64557200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
24	chr11:64547400-64557400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
25	chr11:64547400-64557400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
26	chr11:64547400-64563200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
27	chr11:64547400-64563200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
28	chr11:64547400-64563800	Weak transcription	NHLF	lung
29	chr11:64547400-64569600	Weak transcription	HUES64 Cell Line	embryonic stem cell
30	chr11:64547400-64569800	Weak transcription	NHEK	skin
31	chr11:64547600-64556000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
32	chr11:64547600-64556200	Weak transcription	Right Ventricle	heart
33	chr11:64547600-64556400	Weak transcription	Left Ventricle	heart
34	chr11:64547600-64556800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
35	chr11:64547600-64557000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
36	chr11:64547600-64557200	Weak transcription	Pancreas	Pancrea
37	chr11:64547600-64563600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
38	chr11:64547600-64567000	Weak transcription	HUVEC	blood vessel
39	chr11:64547600-64569800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
40	chr11:64547800-64568800	Weak transcription	Dnd41	blood
41	chr11:64548400-64556000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
42	chr11:64548400-64556200	Weak transcription	Primary hematopoietic stem cells	blood
43	chr11:64548400-64556400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
44	chr11:64548800-64568800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
45	chr11:64550200-64569400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
46	chr11:64550400-64570000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
47	chr11:64551000-64564200	Weak transcription	GM12878-XiMat	blood
48	chr11:64552000-64556000	Weak transcription	Fetal Brain Female	brain
49	chr11:64553800-64568800	Strong transcription	Fetal Stomach	stomach
50	chr11:64554800-64559600	Strong transcription	Brain Germinal Matrix	brain

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