Variant report

Variant	rs522970
Chromosome Location	chr11:64172161-64172162
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs1783518	0.81[CHB][hapmap]
rs1783519	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2360871	1.00[EUR][1000 genomes]
rs2885097	1.00[EUR][1000 genomes]
rs518698	1.00[AMR][1000 genomes]
rs520277	0.89[AMR][1000 genomes]
rs58868966	1.00[EUR][1000 genomes]
rs7117039	1.00[EUR][1000 genomes]
rs7952435	0.81[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832187	chr11:64121969-64312300	Genic enhancers Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:64168000-64173400	Weak transcription	Duodenum Smooth Muscle	Duodenum
2	chr11:64168200-64173000	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr11:64168400-64173600	Weak transcription	Spleen	Spleen
4	chr11:64170800-64173600	Weak transcription	HUES64 Cell Line	embryonic stem cell
5	chr11:64171000-64175200	Weak transcription	Fetal Brain Male	brain
6	chr11:64171400-64173000	Enhancers	Primary monocytes fromperipheralblood	blood
7	chr11:64171400-64173000	Enhancers	Monocytes-CD14+_RO01746	blood
8	chr11:64171600-64172600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr11:64172000-64172200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr11:64172000-64173600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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