Variant report
| Variant | rs11233555 |
|---|---|
| Chromosome Location | chr11:71121618-71121619 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:15)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:15 , 50 per page) page:
1
| No. | Transcrition factor | Chromosome Location | Cell Line | Cell type | Cell Stage | Matched TF binding sites |
|---|---|---|---|---|---|---|
| 1 | POLR2A | chr11:71121277-71122028 | H1-neurons | neurons: | n/a | n/a |
| 2 | CREB1 | chr11:71121322-71121784 | HepG2 | liver: | n/a | n/a |
| 3 | CEBPB | chr11:71121493-71121718 | A549 | lung: | n/a | n/a |
| 4 | CREB1 | chr11:71121296-71121778 | K562 | blood: | n/a | n/a |
| 5 | CREB1 | chr11:71121367-71121872 | GM12878 | blood: | n/a | n/a |
| 6 | JUND | chr11:71121359-71121960 | HepG2 | liver: | n/a | n/a |
| 7 | MAFK | chr11:71121387-71121719 | HepG2 | liver: | n/a | n/a |
| 8 | MAFK | chr11:71121454-71121625 | HepG2 | liver: | n/a | n/a |
| 9 | GATA3 | chr11:71121546-71121978 | SH-SY5Y | brain: | n/a | n/a |
| 10 | SUZ12 | chr11:71121398-71121841 | H1-hESC | embryonic stem cell: | n/a | n/a |
| 11 | CEBPB | chr11:71121577-71121717 | HepG2 | liver: | n/a | n/a |
| 12 | POLR2A | chr11:71121199-71122087 | H1-neurons | neurons: | n/a | n/a |
| 13 | JUN | chr11:71121428-71121943 | HepG2 | liver: | n/a | chr11:71121622-71121635 |
| 14 | ATF1 | chr11:71121445-71121846 | K562 | blood: | n/a | n/a |
| 15 | MAFF | chr11:71121359-71121669 | HepG2 | liver: | n/a | n/a |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr11:71113585..71115621-chr11:71119782..71121639,2 | K562 | blood: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000172900 | TF binding region |
rSNPs within LD-proxies of this variant (count:18)
| rs_ID | r2[population] |
|---|---|
| rs1616994 | 0.88[ASN][1000 genomes] |
| rs1790334 | 0.82[CHB][hapmap] |
| rs1790351 | 0.82[CHB][hapmap] |
| rs1790361 | 0.87[ASN][1000 genomes] |
| rs1790373 | 0.82[CHB][hapmap] |
| rs2002906 | 0.82[CHB][hapmap] |
| rs2186773 | 0.82[CHB][hapmap] |
| rs2276353 | 0.82[CHB][hapmap] |
| rs2276354 | 0.82[CHB][hapmap] |
| rs2282617 | 1.00[CHB][hapmap] |
| rs2511277 | 1.00[CEU][hapmap] |
| rs2851693 | 0.82[CHB][hapmap] |
| rs3794065 | 0.82[CHB][hapmap] |
| rs3794067 | 0.82[CHB][hapmap] |
| rs7129099 | 0.82[CHB][hapmap] |
| rs7926054 | 0.82[CHB][hapmap] |
| rs7950584 | 0.82[CHB][hapmap] |
| rs949177 | 0.82[CHB][hapmap] |
Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1048123 | chr11:70795222-71231382 | Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 21 gene(s) | inside rSNPs | diseases |
| 2 | nsv832202 | chr11:71088949-71131368 | Flanking Active TSS Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 3 | nsv526973 | chr11:71088949-71215880 | Weak transcription Strong transcription Active TSS Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 14 gene(s) | inside rSNPs | diseases |
| 4 | nsv897897 | chr11:71088949-71217571 | Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 14 gene(s) | inside rSNPs | diseases |
| 5 | nsv530623 | chr11:71088949-72020418 | Enhancers Transcr. at gene 5' and 3' Active TSS Strong transcription Bivalent Enhancer Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 134 gene(s) | inside rSNPs | diseases |
| 6 | nsv897898 | chr11:71103143-71211654 | Weak transcription ZNF genes & repeats Active TSS Strong transcription Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 14 gene(s) | inside rSNPs | diseases |
| 7 | nsv519224 | chr11:71108341-71215880 | Strong transcription Flanking Bivalent TSS/Enh Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 14 gene(s) | inside rSNPs | diseases |
| 8 | esv3345939 | chr11:71119404-71123802 | Enhancers Weak transcription ZNF genes & repeats | TF binding regionChromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr11:71121400-71121800 | ZNF genes & repeats | Fetal Kidney | kidney |
