Variant report

Variant	rs1616994
Chromosome Location	chr11:71126529-71126530
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:71118859..71120385-chr11:71125434..71128124,2	MCF-7	breast:
2	chr11:71124869..71127186-chr11:71130587..71132175,2	K562	blood:

Extended variants
information (count: 59 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs10898117	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs11233555	1.00[CHB][hapmap];0.88[ASN][1000 genomes]
rs11608138	1.00[CHB][hapmap];0.90[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs1623080	1.00[CEU][hapmap];0.82[AMR][1000 genomes]
rs1790334	1.00[CHB][hapmap];0.89[AMR][1000 genomes]
rs1790336	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1790337	0.85[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs1790346	1.00[CHB][hapmap];0.87[AMR][1000 genomes]
rs1790351	1.00[CHB][hapmap];0.84[AMR][1000 genomes]
rs1790354	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs1790355	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs1790356	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs1790361	0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1790373	1.00[CHB][hapmap]
rs1790374	0.96[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs1792238	0.97[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1792243	0.95[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1792273	1.00[CHB][hapmap]
rs1792276	0.91[AMR][1000 genomes]
rs1792278	1.00[CEU][hapmap]
rs1792279	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs1792285	0.84[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs1792316	1.00[CHB][hapmap]
rs1792322	0.88[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1792326	0.91[AFR][1000 genomes]
rs2002906	1.00[CHB][hapmap]
rs2155425	1.00[CHB][hapmap]
rs2186773	1.00[CHB][hapmap]
rs2186778	1.00[CHB][hapmap]
rs2276353	1.00[CHB][hapmap]
rs2276354	1.00[CHB][hapmap]
rs2282617	1.00[CHB][hapmap]
rs2851693	1.00[CHB][hapmap];0.89[AMR][1000 genomes]
rs3794065	1.00[CHB][hapmap]
rs3794067	1.00[CHB][hapmap]
rs3814731	1.00[CHB][hapmap]
rs4944063	1.00[CHB][hapmap]
rs4944064	1.00[CHB][hapmap]
rs4945007	1.00[CHB][hapmap]
rs4945013	1.00[CHB][hapmap]
rs6592180	1.00[CHB][hapmap]
rs7110053	1.00[CEU][hapmap];0.91[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs7110316	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs7124675	0.91[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs7129099	1.00[CHB][hapmap]
rs751389	1.00[CHB][hapmap]
rs7690	0.87[AMR][1000 genomes]
rs7926054	1.00[CHB][hapmap]
rs7950584	1.00[CHB][hapmap]
rs949176	0.85[AMR][1000 genomes]
rs949177	1.00[CHB][hapmap];0.91[AMR][1000 genomes]
rs949178	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1048123	chr11:70795222-71231382	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	21 gene(s)	inside rSNPs	diseases
2	nsv832202	chr11:71088949-71131368	Flanking Active TSS Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv526973	chr11:71088949-71215880	Weak transcription Strong transcription Active TSS Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	14 gene(s)	inside rSNPs	diseases
4	nsv897897	chr11:71088949-71217571	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	14 gene(s)	inside rSNPs	diseases
5	nsv530623	chr11:71088949-72020418	Enhancers Transcr. at gene 5' and 3' Active TSS Strong transcription Bivalent Enhancer Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	134 gene(s)	inside rSNPs	diseases
6	nsv897898	chr11:71103143-71211654	Weak transcription ZNF genes & repeats Active TSS Strong transcription Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	14 gene(s)	inside rSNPs	diseases
7	nsv519224	chr11:71108341-71215880	Strong transcription Flanking Bivalent TSS/Enh Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:71123600-71139600	Weak transcription	Right Atrium	heart

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