Variant report

Variant	rs1792278
Chromosome Location	chr11:71137473-71137474
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 82 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:76)

rs_ID	r²[population]
rs1044535	1.00[CEU][hapmap];1.00[CHB][hapmap];0.84[JPT][hapmap];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10751102	0.91[EUR][1000 genomes]
rs10792743	0.86[EUR][1000 genomes]
rs10898117	1.00[CEU][hapmap];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11233606	0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11608138	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs12281481	0.88[EUR][1000 genomes]
rs1623080	1.00[CEU][hapmap];1.00[JPT][hapmap];0.96[AFR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1626291	0.81[AFR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1790325	1.00[CEU][hapmap];1.00[CHB][hapmap];0.84[JPT][hapmap];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1790326	0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1790327	0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1790329	0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1790334	0.90[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs1790337	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs1790346	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs1790347	0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1790348	0.88[CHB][hapmap];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1790351	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs1790354	0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1790355	0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1790356	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1790357	0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1790373	0.85[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs1792265	0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1792268	0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1792270	1.00[CEU][hapmap];1.00[CHB][hapmap];0.84[JPT][hapmap];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1792271	1.00[CEU][hapmap];0.88[CHB][hapmap];0.85[JPT][hapmap];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1792272	0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1792273	1.00[CEU][hapmap];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1792274	0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1792275	1.00[CEU][hapmap];1.00[CHB][hapmap];0.84[JPT][hapmap];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1792276	0.95[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs1792279	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];0.81[AFR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1792285	0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1792316	0.83[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs1792319	0.91[EUR][1000 genomes]
rs2155425	0.86[EUR][1000 genomes]
rs2186773	0.82[EUR][1000 genomes]
rs2186778	0.91[EUR][1000 genomes]
rs2276353	0.81[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs2276354	0.82[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs2282617	0.82[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs2282618	0.91[EUR][1000 genomes]
rs2282619	0.83[EUR][1000 genomes]
rs2298772	0.88[EUR][1000 genomes]
rs2511279	0.82[EUR][1000 genomes]
rs2851693	1.00[CEU][hapmap];0.90[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs3763859	0.91[EUR][1000 genomes]
rs3763860	0.91[EUR][1000 genomes]
rs3794065	0.91[EUR][1000 genomes]
rs3794066	0.91[EUR][1000 genomes]
rs3794067	0.91[EUR][1000 genomes]
rs3814731	0.91[EUR][1000 genomes]
rs3814734	0.91[EUR][1000 genomes]
rs4944063	0.81[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs4944064	0.81[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs4944075	0.88[EUR][1000 genomes]
rs4944997	0.88[CHB][hapmap]
rs4945001	0.88[EUR][1000 genomes]
rs4945007	0.86[EUR][1000 genomes]
rs4945013	0.82[EUR][1000 genomes]
rs6592154	0.91[EUR][1000 genomes]
rs6592180	0.82[EUR][1000 genomes]
rs7110053	1.00[CEU][hapmap];0.92[JPT][hapmap];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7110316	0.89[EUR][1000 genomes]
rs7123973	0.91[EUR][1000 genomes]
rs7124675	0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7129099	0.88[EUR][1000 genomes]
rs751389	0.88[EUR][1000 genomes]
rs760241	1.00[CEU][hapmap];1.00[CHB][hapmap];0.84[JPT][hapmap];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7690	0.94[EUR][1000 genomes]
rs7926054	0.82[EUR][1000 genomes]
rs7950584	0.86[EUR][1000 genomes]
rs949176	0.94[EUR][1000 genomes]
rs949177	1.00[CEU][hapmap];0.90[AFR][1000 genomes];0.97[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1048123	chr11:70795222-71231382	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	21 gene(s)	inside rSNPs	diseases
2	nsv526973	chr11:71088949-71215880	Weak transcription Strong transcription Active TSS Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	14 gene(s)	inside rSNPs	diseases
3	nsv897897	chr11:71088949-71217571	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	14 gene(s)	inside rSNPs	diseases
4	nsv530623	chr11:71088949-72020418	Enhancers Transcr. at gene 5' and 3' Active TSS Strong transcription Bivalent Enhancer Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	134 gene(s)	inside rSNPs	diseases
5	nsv897898	chr11:71103143-71211654	Weak transcription ZNF genes & repeats Active TSS Strong transcription Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	14 gene(s)	inside rSNPs	diseases
6	nsv519224	chr11:71108341-71215880	Strong transcription Flanking Bivalent TSS/Enh Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:71123600-71139600	Weak transcription	Right Atrium	heart
2	chr11:71132600-71144000	Weak transcription	Spleen	Spleen
3	chr11:71135000-71150600	Weak transcription	NH-A	brain
4	chr11:71135400-71139600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
5	chr11:71135400-71145000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr11:71136400-71137800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr11:71136400-71138000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr11:71136400-71138000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr11:71136400-71138000	Enhancers	HMEC	breast
10	chr11:71136600-71137800	Enhancers	GM12878-XiMat	blood
11	chr11:71136600-71137800	Enhancers	NHEK	skin
12	chr11:71136800-71138000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr11:71136800-71138000	Enhancers	NHDF-Ad	bronchial
14	chr11:71137000-71137600	Enhancers	Cortex derived primary cultured neurospheres	brain
15	chr11:71137000-71140000	Weak transcription	Stomach Mucosa	stomach
16	chr11:71137000-71144800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr11:71137200-71140200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
18	chr11:71137200-71144000	Weak transcription	Hela-S3	cervix
19	chr11:71137200-71145000	Weak transcription	Brain Germinal Matrix	brain
20	chr11:71137200-71149600	Weak transcription	Primary B cells from peripheral blood	blood

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