Variant report

Variant	rs2511279
Chromosome Location	chr11:71130419-71130420
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs1044535	0.94[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10898117	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11233606	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11608138	0.87[EUR][1000 genomes]
rs1623080	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1626291	0.82[EUR][1000 genomes]
rs1790325	0.97[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1790326	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1790327	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1790329	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1790334	0.82[EUR][1000 genomes]
rs1790336	0.83[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs1790337	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1790346	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1790347	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1790348	0.94[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1790351	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1790354	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1790355	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1790356	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1790357	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1790373	0.82[EUR][1000 genomes]
rs1790374	0.85[ASN][1000 genomes]
rs1792238	0.83[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs1792243	0.80[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs1792265	0.97[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1792268	0.97[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1792270	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1792271	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1792272	0.94[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1792273	0.94[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1792274	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1792275	0.94[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1792276	0.84[EUR][1000 genomes]
rs1792279	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1792285	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1792316	0.82[EUR][1000 genomes]
rs1792319	0.84[EUR][1000 genomes]
rs2851693	0.84[EUR][1000 genomes]
rs7110053	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7110316	0.82[EUR][1000 genomes]
rs7124675	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs760241	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7690	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs949176	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs949177	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1048123	chr11:70795222-71231382	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	21 gene(s)	inside rSNPs	diseases
2	nsv832202	chr11:71088949-71131368	Flanking Active TSS Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv526973	chr11:71088949-71215880	Weak transcription Strong transcription Active TSS Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	14 gene(s)	inside rSNPs	diseases
4	nsv897897	chr11:71088949-71217571	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	14 gene(s)	inside rSNPs	diseases
5	nsv530623	chr11:71088949-72020418	Enhancers Transcr. at gene 5' and 3' Active TSS Strong transcription Bivalent Enhancer Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	134 gene(s)	inside rSNPs	diseases
6	nsv897898	chr11:71103143-71211654	Weak transcription ZNF genes & repeats Active TSS Strong transcription Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	14 gene(s)	inside rSNPs	diseases
7	nsv519224	chr11:71108341-71215880	Strong transcription Flanking Bivalent TSS/Enh Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:71123600-71139600	Weak transcription	Right Atrium	heart
2	chr11:71128600-71130800	Enhancers	Fetal Muscle Leg	muscle
3	chr11:71129000-71131800	Enhancers	Primary B cells from peripheral blood	blood
4	chr11:71129200-71130600	Enhancers	Fetal Muscle Trunk	muscle
5	chr11:71129200-71131200	Enhancers	HSMM	muscle
6	chr11:71129200-71133600	Enhancers	Primary B cells from cord blood	blood
7	chr11:71129200-71134000	Enhancers	GM12878-XiMat	blood
8	chr11:71130000-71130600	Weak transcription	Duodenum Mucosa	Duodenum

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links