Variant report
Variant | rs1792243 |
---|---|
Chromosome Location | chr11:71118681-71118682 |
allele | A/G |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
No data |
No data |
No data |
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No data |
rs_ID | r2[population] |
---|---|
rs1044535 | 0.81[MEX][hapmap];0.80[AMR][1000 genomes] |
rs10898117 | 1.00[ASW][hapmap];1.00[CHB][hapmap];0.85[CHD][hapmap];0.91[LWK][hapmap];0.96[MKK][hapmap];0.87[YRI][hapmap];0.87[AMR][1000 genomes] |
rs11233606 | 0.86[AMR][1000 genomes];0.80[ASN][1000 genomes] |
rs11608138 | 1.00[ASW][hapmap];0.91[LWK][hapmap];0.88[MKK][hapmap];0.81[YRI][hapmap];0.85[AFR][1000 genomes] |
rs1616994 | 0.95[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs1623080 | 0.86[AMR][1000 genomes] |
rs1790325 | 0.81[MEX][hapmap] |
rs1790329 | 0.80[AMR][1000 genomes] |
rs1790334 | 1.00[ASW][hapmap] |
rs1790336 | 0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes] |
rs1790337 | 0.90[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.89[JPT][hapmap];0.88[LWK][hapmap];0.93[MKK][hapmap];0.80[AFR][1000 genomes];0.86[AMR][1000 genomes];0.92[ASN][1000 genomes] |
rs1790347 | 0.80[AMR][1000 genomes] |
rs1790348 | 0.80[AMR][1000 genomes] |
rs1790354 | 0.87[AMR][1000 genomes] |
rs1790355 | 0.87[AMR][1000 genomes] |
rs1790356 | 0.87[AMR][1000 genomes] |
rs1790357 | 0.86[AMR][1000 genomes] |
rs1790361 | 0.91[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs1790366 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap] |
rs1790374 | 0.81[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes] |
rs1792238 | 0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes] |
rs1792270 | 0.81[MEX][hapmap];0.80[AMR][1000 genomes] |
rs1792271 | 0.80[AMR][1000 genomes] |
rs1792272 | 0.80[AMR][1000 genomes] |
rs1792273 | 0.80[AMR][1000 genomes] |
rs1792274 | 0.80[AMR][1000 genomes] |
rs1792275 | 0.81[MEX][hapmap];0.80[AMR][1000 genomes] |
rs1792279 | 0.87[AMR][1000 genomes] |
rs1792285 | 0.87[AMR][1000 genomes] |
rs1792316 | 1.00[ASW][hapmap];0.81[MKK][hapmap] |
rs1792322 | 0.91[AFR][1000 genomes];1.00[EUR][1000 genomes] |
rs1792326 | 1.00[YRI][hapmap];0.94[AFR][1000 genomes] |
rs1792327 | 0.93[GIH][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.81[AMR][1000 genomes] |
rs1792328 | 0.83[GIH][hapmap];0.88[TSI][hapmap] |
rs2511277 | 1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap] |
rs2511279 | 0.80[AMR][1000 genomes];0.92[ASN][1000 genomes] |
rs3814731 | 1.00[ASW][hapmap] |
rs4944063 | 1.00[ASW][hapmap];0.81[MKK][hapmap] |
rs4944064 | 1.00[ASW][hapmap];0.81[MKK][hapmap] |
rs4945007 | 1.00[ASW][hapmap] |
rs6592180 | 1.00[ASW][hapmap] |
rs7110053 | 0.86[AFR][1000 genomes];0.87[AMR][1000 genomes];0.80[ASN][1000 genomes] |
rs7124675 | 0.86[AFR][1000 genomes];0.87[AMR][1000 genomes];0.80[ASN][1000 genomes] |
rs751389 | 1.00[ASW][hapmap] |
rs760241 | 0.81[MEX][hapmap];0.80[AMR][1000 genomes] |
rs949178 | 0.90[ASW][hapmap];0.81[MKK][hapmap] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv1048123 | chr11:70795222-71231382 | Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 21 gene(s) | inside rSNPs | diseases |
2 | nsv832202 | chr11:71088949-71131368 | Flanking Active TSS Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
3 | nsv526973 | chr11:71088949-71215880 | Weak transcription Strong transcription Active TSS Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 14 gene(s) | inside rSNPs | diseases |
4 | nsv897897 | chr11:71088949-71217571 | Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 14 gene(s) | inside rSNPs | diseases |
5 | nsv530623 | chr11:71088949-72020418 | Enhancers Transcr. at gene 5' and 3' Active TSS Strong transcription Bivalent Enhancer Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 134 gene(s) | inside rSNPs | diseases |
6 | nsv897898 | chr11:71103143-71211654 | Weak transcription ZNF genes & repeats Active TSS Strong transcription Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 14 gene(s) | inside rSNPs | diseases |
7 | nsv519224 | chr11:71108341-71215880 | Strong transcription Flanking Bivalent TSS/Enh Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 14 gene(s) | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr11:71114400-71118800 | Weak transcription | iPS DF 19.11 Cell Line | embryonic stem cell |
2 | chr11:71118400-71119000 | Enhancers | H1 BMP4 Derived Trophoblast Cultured Cells | ES cell derived |