Variant report

Variant	rs11233794
Chromosome Location	chr11:83609208-83609209
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10501550	1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs10898179	0.86[YRI][hapmap];0.82[EUR][1000 genomes]
rs10898180	0.86[YRI][hapmap];0.85[EUR][1000 genomes]
rs11233772	0.97[AFR][1000 genomes];0.90[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11233795	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11233801	0.92[YRI][hapmap];0.82[EUR][1000 genomes]
rs11233812	0.86[YRI][hapmap]
rs11518747	0.98[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs11826675	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12362149	0.93[YRI][hapmap];0.84[EUR][1000 genomes]
rs12363647	0.91[YRI][hapmap];0.82[EUR][1000 genomes]
rs12364142	0.85[YRI][hapmap]
rs12364727	1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1483391	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1878263	0.83[YRI][hapmap];0.98[AFR][1000 genomes]
rs5025916	0.91[YRI][hapmap];0.98[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs56112908	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv468765	chr11:83591584-83620940	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv555607	chr11:83591584-83620940	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:83607000-83611400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr11:83607200-83628800	Weak transcription	Brain Angular Gyrus	brain
3	chr11:83608400-83620800	Weak transcription	Brain Cingulate Gyrus	brain
4	chr11:83608400-83634600	Weak transcription	Brain Hippocampus Middle	brain
5	chr11:83608800-83629400	Weak transcription	Brain Inferior Temporal Lobe	brain
6	chr11:83609200-83616600	Weak transcription	Pancreas	Pancrea

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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