Variant report

Variant	rs12362149
Chromosome Location	chr11:83619310-83619311
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10501550	1.00[CEU][hapmap];0.91[YRI][hapmap]
rs10898179	1.00[CEU][hapmap];0.93[YRI][hapmap];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10898180	1.00[CEU][hapmap];0.93[YRI][hapmap];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11233794	0.93[YRI][hapmap];0.84[EUR][1000 genomes]
rs11233795	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11233801	1.00[CEU][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11233808	0.82[YRI][hapmap];0.90[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs11233812	1.00[CEU][hapmap];0.92[YRI][hapmap];0.83[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs12363647	1.00[CEU][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs12364142	0.92[YRI][hapmap]
rs12364727	1.00[CEU][hapmap];0.91[YRI][hapmap]
rs1483391	1.00[CEU][hapmap];0.93[YRI][hapmap]
rs5025916	1.00[CEU][hapmap];0.83[YRI][hapmap]
rs7930662	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv468765	chr11:83591584-83620940	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv555607	chr11:83591584-83620940	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:83607200-83628800	Weak transcription	Brain Angular Gyrus	brain
2	chr11:83608400-83620800	Weak transcription	Brain Cingulate Gyrus	brain
3	chr11:83608400-83634600	Weak transcription	Brain Hippocampus Middle	brain
4	chr11:83608800-83629400	Weak transcription	Brain Inferior Temporal Lobe	brain
5	chr11:83618200-83641200	Weak transcription	Brain Anterior Caudate	brain
6	chr11:83618800-83623600	Enhancers	Liver	Liver

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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